PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010621m
Common NameCICLE_v10010621mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 195aa    MW: 21576.3 Da    PI: 9.0197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010621mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.2e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++v+ +G+g +W + +++ g++R++k+c++rw++yl
  Ciclev10010621m 14 RGPWSPEEDATLKRYVETHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding42.51.5e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T++Ed  +  +  q G++ W+ Ia++++ gRt++++k++w++
  Ciclev10010621m  69 GNFTEDEDHVICTLYSQIGSR-WSIIASRLP-GRTDNDVKNYWNT 111
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.863962IPR017930Myb domain
SuperFamilySSF466891.6E-2811109IPR009057Homeodomain-like
SMARTSM007173.1E-121364IPR001005SANT/Myb domain
PfamPF002494.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-251569IPR009057Homeodomain-like
CDDcd001674.95E-101662No hitNo description
PROSITE profilePS5129422.25763117IPR017930Myb domain
SMARTSM007175.5E-1167115IPR001005SANT/Myb domain
PfamPF002498.2E-1269111IPR001005SANT/Myb domain
CDDcd001673.01E-870111No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKRYVE THGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGN FTEDEDHVIC TLYSQIGSRW SIIASRLPGR TDNDVKNYWN TKLKKKLLAG  120
KVSLLTSNNA NNSPIISGSN PTDTNHLHDS NPSISLPKSE ACDPQYPASP TQLSSSPSMP  180
LLTDHHDHIA YGLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450765.21e-143transcription factor MYB87
RefseqXP_006475979.11e-143transcription factor MYB87-like
SwissprotQ9M2Y96e-72RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A067GJZ71e-142A0A067GJZ7_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5Q7G81e-141A0A2H5Q7G8_CITUN; Uncharacterized protein
TrEMBLV4UIF31e-142V4UIF3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006475979.11e-142(Citrus sinensis)
STRINGXP_006450765.11e-143(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-74myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]