PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010579m
Common NameCICLE_v10010579mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 455aa    MW: 51360.2 Da    PI: 7.521
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010579mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.41.2e-35491921128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                      lp+G++F+Ptd+el+ ++L++kve+k+       ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++      
  Ciclev10010579m  49 LPAGVKFDPTDQELI-DHLEAKVEAKDmvkphplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlq 140
                      799************.99*********77776553333333766646**********.555666799******************733345555 PP

              NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Ciclev10010579m 141 ggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 192
                      44778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3844211IPR003441NAC domain
PROSITE profilePS5100532.81249211IPR003441NAC domain
PfamPF023652.8E-1650192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSGSKSNLGT NISSSDLIDA KLEEHQLCGS KQCPGCGHKL EAKPDWLGLP AGVKFDPTDQ  60
ELIDHLEAKV EAKDMVKPHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSRHFFHRPS  120
KAYTTGTRKR RKIQTECDLQ GGETRWHKTG KTRPVMVNGK QKGCKKILVL YTNFGKNRKP  180
EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS EKSATTGEGS SDPNSRRDSG  240
SGSCSSKEMI PHRDHEVSGA QVAAAMSSYG AIDMQQLKSD HFSFVPFRKS FDEVGIGEAS  300
TAREAPAHGT CEDIRDHHQR PHHHLAHDHR QQQQQHQQQH QQQQQQQHHT HHQQIATTAF  360
HISRPSHPIS TIISPSSLHH TSIILDEDSY HVSRIMLQNE SFQQQQQQQQ QQQQHHKLGG  420
RSASGLEELI MGCTSSSDIK EVSINFLTLK SMNSL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451346.20.0LOW QUALITY PROTEIN: NAC domain-containing protein 75
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLV4UQ380.0V4UQ38_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006451346.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-146NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]