PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010259m
Common NameCICLE_v10010259mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 168aa    MW: 19611.1 Da    PI: 10.3883
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010259mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.71.4e-181053245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     r e+   rq+ +skR+ gilKKA EL vLCd++ a+++fs+tgk
  Ciclev10010259m 10 RLESMKARQTKYSKRKIGILKKARELAVLCDTDLALLMFSPTGK 53
                     6688999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.6E-26160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-21184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.708153IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-15323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-171154IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGRRKLKIRR LESMKARQTK YSKRKIGILK KARELAVLCD TDLALLMFSP TGKPSLCVGQ  60
NKDLSTVLER LAKMSVDDRE ERLHDEGDIK FIVLCISEIH TQNNIPFYLV NVYLLKKIYA  120
NSEVDPRNFS LDREWKNPHN VKDIAQIHIM EEHLVGSLLK IRNKKRQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5731491e-96AB573149.1 Citrus unshiu genomic DNA, polyembryony locus, cultivar: Miyagawa wase.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022754147.15e-54agamous-like MADS-box protein AGL65
TrEMBLV4UPM41e-120V4UPM4_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006452985.11e-121(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.15e-26AGAMOUS-like 33