PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 372aa MW: 42056.1 Da PI: 6.9956

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10010237m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.6	1.3e-12	39	95	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Ciclev10010237m 39 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 95 57*****************99998898888888******************98 PP
2	AP2	51.1	3.2e-16	138	189	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Ciclev10010237m 138 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 189 89**99******99966...3.6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.7E-15	39	105	IPR016177	DNA-binding domain
Pfam	PF00847	1.1E-8	39	95	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.9E-13	40	104	IPR001471	AP2/ERF domain
SMART	SM00380	5.4E-21	40	109	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.861	40	103	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-6	41	52	IPR001471	AP2/ERF domain
CDD	cd00018	3.01E-24	138	199	No hit	No description
SuperFamily	SSF54171	1.11E-17	138	199	IPR016177	DNA-binding domain
Pfam	PF00847	5.9E-12	138	189	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-17	139	198	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-24	139	203	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.334	139	197	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-6	179	199	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MAKLSQQSQK SNANNNNGVT KVKRTRRSVP RDSPPQRSSI YRGVTRHRWT GRYEAHLWDK 60 NCWNESQNKK GRQGAYDDEE AAAHAYDLAA LKYWGPDTIL NFPLSTYQKE LKDMEGLSRE 120 EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAATAY 180 DMAAIEYRGL NAVTNFDLSR YIKWLKPNHQ INPHLIDTTS PSSSSIINNG NNSDYNHQES 240 NSSFFNNNNQ SGSTVRDQPP TTTLLTDHYH QPVVRPVSAT SALGLLLQSS KFKEMMEMTS 300 SSEADNHHCS SLTPSTESSD PFQCSFPEDI QTYFGGCQDS SNFGEGDDDD DVFFRELNSF 360 VPPMFQCDFD A*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MAKLSQQSQK SNANNNNGVT KVKRTRRSVP RDSPPQRSSI YRGVTRHRWT GRYEAHLWDK  60
NCWNESQNKK GRQGAYDDEE AAAHAYDLAA LKYWGPDTIL NFPLSTYQKE LKDMEGLSRE  120
EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAATAY  180
DMAAIEYRGL NAVTNFDLSR YIKWLKPNHQ INPHLIDTTS PSSSSIINNG NNSDYNHQES  240
NSSFFNNNNQ SGSTVRDQPP TTTLLTDHYH QPVVRPVSAT SALGLLLQSS KFKEMMEMTS  300
SSEADNHHCS SLTPSTESSD PFQCSFPEDI QTYFGGCQDS SNFGEGDDDD DVFFRELNSF  360
VPPMFQCDFD A*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006453545.1	0.0	AP2-like ethylene-responsive transcription factor At1g16060
Swissprot	Q94AN4	1e-100	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	V4UR26	0.0	V4UR26_9ROSI; Uncharacterized protein
STRING	XP_006453545.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM553	27	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-87	ARIA-interacting double AP2 domain protein

Link Out ? help Back to Top
Phytozome	Ciclev10010237m
Entrez Gene	18053728

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]