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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10009827m | ||||||||
Common Name | CICLE_v10009827mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 145aa MW: 15609.3 Da PI: 8.4483 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.5e-18 | 14 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +g+WvAe+r p++ r r++lg++ ta+eAa+a++aa +l+g Ciclev10009827m 14 RYKGVRMRK-WGKWVAEVRQPNS---RGRIWLGSYKTADEAARAYDAAVVCLRG 63 69*****99.*******999843...48***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.54E-28 | 14 | 73 | No hit | No description |
Pfam | PF00847 | 8.6E-12 | 14 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 14 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.524 | 14 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-34 | 14 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 14 | 73 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-9 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MVRPSGGREG NNGRYKGVRM RKWGKWVAEV RQPNSRGRIW LGSYKTADEA ARAYDAAVVC 60 LRGSSATLNF PDNPPEIPLA DEMTPVQIQE FAFRHARRAP AQSVEDLGSN EAAVVSASGS 120 SSGYGVDDVG VDGAFYQSPG LWTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 12 | 71 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.7091 | 0.0 | abscission zone |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006474696.1 | 1e-102 | ethylene-responsive transcription factor ERF016 | ||||
Refseq | XP_024033512.1 | 1e-102 | ethylene-responsive transcription factor ERF016 | ||||
Swissprot | Q9C591 | 3e-34 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | A0A067GEG8 | 1e-101 | A0A067GEG8_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NBQ0 | 1e-101 | A0A2H5NBQ0_CITUN; Uncharacterized protein | ||||
TrEMBL | V4UIW1 | 1e-101 | V4UIW1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006474696.1 | 1e-102 | (Citrus sinensis) | ||||
STRING | XP_006452852.1 | 1e-102 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 1e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10009827m |
Entrez Gene | 18055377 |