PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009370m
Common NameCICLE_v10009370mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 233aa    MW: 25495.3 Da    PI: 4.8334
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009370mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-194292155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Ciclev10009370m 42 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 92
                     68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-134292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3243101IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2243101IPR016177DNA-binding domain
SMARTSM003803.3E-3643106IPR001471AP2/ERF domain
PROSITE profilePS5103223.4243100IPR001471AP2/ERF domain
PRINTSPR003672.3E-104455IPR001471AP2/ERF domain
CDDcd000182.90E-3244102No hitNo description
PRINTSPR003672.3E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSEPQNSSEA ESSSSNSSLS PTNAHQDSKK IKRMRDQSSK HPVYRGVRMR NWGKWVSEIR  60
EPRKKSRIWL GTFPTPEMAA RAHDVAALSI KGNSAILNFP ELADSLPRPN SLAPRDVQAA  120
AAKAAQMDKF DSSSSSSLSS LVSAMDLSTG SEELSEIVEL PSLGSSYDYK SSELRNEFVF  180
VDSVDGWMYT PPWFQSVEVE DYQFGVLPES SVFSSTNFGL GLGLGEGLLW DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1935101673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450687.11e-168dehydration-responsive element-binding protein 3
SwissprotQ9LYD35e-82DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLV4UCZ51e-166V4UCZ5_9ROSI; Uncharacterized protein
STRINGXP_006450687.11e-167(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-77ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]