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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10009336m |
| Common Name | CICLE_v10009336mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
MYB |
| Protein Properties |
Length: 239aa MW: 26149 Da PI: 4.7123 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10009336m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.9 | 8.6e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEd +l+++ +q+G+g +W + +++ g++R++k+c++rw++yl
Ciclev10009336m 14 RGPWSAEEDSILKNYLEQFGNGgNWIALPKKAGLNRCGKSCRLRWLNYL 62
89*********************************************97 PP
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| 2 | Myb_DNA-binding | 40.1 | 8.8e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +T+eEd ++ ++ +G++ W+ Ia+ ++ gRt++++k++w++
Ciclev10009336m 69 GGFTKEEDTIICNLYCTMGSR-WSVIASQLP-GRTDNDVKNYWNT 111
569******************.*********.***********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MGRAPCCDKA NVKRGPWSAE EDSILKNYLE QFGNGGNWIA LPKKAGLNRC GKSCRLRWLN 60
YLRPDIKHGG FTKEEDTIIC NLYCTMGSRW SVIASQLPGR TDNDVKNYWN TKLKKNVLAG 120
KLSDNTQVSV STIPEEFGNS SYYLSADSAA GMIFDPSANS NYGNKMTSTT QEAAAASSLS 180
ISSSSSTLEN NYDLRSANGN VEDEGILLDD FDFEYSYELL NGFDFEKASN EVAQCLGG*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
