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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10009297m | ||||||||
Common Name | CICLE_v100092852mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 28152.1 Da PI: 4.912 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.2e-13 | 58 | 100 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr+++P+ + K++Ka+i + A++YI++L Ciclev10009297m 58 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIQEL 100 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.952 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-18 | 52 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.30E-13 | 54 | 105 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.2E-17 | 57 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-15 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-11 | 58 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MENLGEDYQQ EYQNYWETKM FLQNEEFDTW PLDEAFSGYY DSSSPDGAAS SAASKNIVSE 60 RNRRKKLNER LFALRSVVPN ISKMDKASII KDAIDYIQEL HEQEKRIRDE IMELESGKSK 120 KNFGFDFEQE LPVLLRPKKK KIDRFFDSAG SRTAPVEILE LRVKTMGEKI LVVSVTCSKR 180 TDTMVKLCEA FESLKLKIIT ANITAVAGRL LKTAFIEADE EEMDDLKIKI QTAIQALNDP 240 SSPMSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.9309 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006453237.1 | 0.0 | transcription factor bHLH35 | ||||
Refseq | XP_006474281.1 | 0.0 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 6e-97 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | V4UJY2 | 1e-180 | V4UJY2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006474281.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 7e-90 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10009297m |
Entrez Gene | 18055004 |