PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009138m
Common NameCICLE_v10009138mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 281aa    MW: 30029.7 Da    PI: 4.6654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009138mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-1859109155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Ciclev10009138m  59 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 109
                      68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1259109IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2160117IPR016177DNA-binding domain
PROSITE profilePS5103223.07760117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3160118IPR001471AP2/ERF domain
SMARTSM003801.8E-3560123IPR001471AP2/ERF domain
PRINTSPR003673.5E-106172IPR001471AP2/ERF domain
CDDcd000181.07E-3161117No hitNo description
PRINTSPR003673.5E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MTEWNSSEAD SNNSPSSSGS SSLTNPPTGK PVTSDPDPTP TPDAAKKQKK RPRDDSKHPV  60
YRGVRMRAWG KWVSEIREPR KKSRIWLGTF STPEMAARAH DVAALSIKGA SAILNFPKLA  120
GSLPRPASNS PRDVQAAAAK AASMEIFDNP LPSISHSSSS SSLSSSSSSP TSTPTSSSSS  180
PLVVPSDVST ATPEELSEIV ELPSLGASYD ESSESGNDFV FVDSSWYDYN YDYNYYYNIE  240
EEGECFNFMN NDSMQVQNSS SGGGGCGAIT AGFESLLWQH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18561171072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451256.10.0ethylene-responsive transcription factor TINY
RefseqXP_015381524.10.0ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-62DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLV4UPW20.0V4UPW2_9ROSI; Uncharacterized protein
STRINGXP_006494316.10.0(Citrus sinensis)
STRINGXP_006451256.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-60ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]