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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10009058m | ||||||||
Common Name | CICLE_v10008515mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bZIP | ||||||||
Protein Properties | Length: 297aa MW: 31731 Da PI: 8.5081 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.1 | 1.4e-16 | 112 | 168 | 3 | 59 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +lkr rr+ +NRe+ArrsR+RK+a ++eLe v+ L++eN +L k+ +++++ Ciclev10009058m 112 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA 168 69******************************************7766666666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.3E-16 | 110 | 174 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.415 | 112 | 175 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.6E-14 | 113 | 167 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.97E-12 | 113 | 165 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.5E-13 | 114 | 167 | No hit | No description |
CDD | cd14702 | 4.58E-22 | 115 | 165 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 117 | 132 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MAMKGIISSN TGTGGVSVTT GNLHKRWSQS QNPNSSKRST IVTTTTIDSQ SSICGSVTGN 60 WSAATPTSGD KTNTIDCKAR LASSGSSADH SDDEDLEIEA GPCEQSTDHP IDLKRIRRMV 120 SNRESARRSR KRKQAHMQEL ELQVERLKGE NATLYKQFTD AAQQYKEANT NNRVLKSDVE 180 ALRAKVRLAE DVVSVGSLTC GLNQLLQSHL SPVLQPINSI ITSHNNNNNN NIGRHQLANV 240 SPTLTVPGNG ASFSAISSTS GHRSSLGVGL ANPDIHNSNN TAVNDALSCV SSDIWP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 132 | RRSRKRK |
2 | 126 | 133 | RRSRKRKQ |
3 | 128 | 133 | SRKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.20472 | 0.0 | abscission zone |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450107.1 | 0.0 | basic leucine zipper 9 isoform X2 | ||||
Swissprot | Q9FUD3 | 7e-63 | BZIP9_ARATH; Basic leucine zipper 9 | ||||
TrEMBL | V4UBE6 | 0.0 | V4UBE6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006450106.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 3e-56 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10009058m |
Entrez Gene | 18053973 |
Publications ? help Back to Top | |||
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