PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008968m
Common NameCICLE_v10008968mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 315aa    MW: 35014.3 Da    PI: 10.1608
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008968mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.9e-19178211134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Ciclev10008968m 178 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 211
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-13171213No hitNo description
PROSITE profilePS5011413.257172208IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-18172223IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.1E-15176212IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.44E-13177207No hitNo description
PfamPF003208.1E-17178211IPR000679Zinc finger, GATA-type
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTPVHLNPPH DSDPFQLAEE QKDDQHLHLL HSSSHNRAAS SSVSWTNFQD QRMIIMEESQ  60
QHDQKARVDH SGSSNLQVFS SSSIQTKKMN NITNNKLPIR KREVGEGTTS ENGSSSSGKW  120
MSSKIRLMHK MINSSSNSTA THELAVKVTQ KLQYHQLHDN SEVNSFNSSN SNNTMRACSD  180
CNTTTTPLWR SGPRGPKSLC NACGIRQRKA RRAMQAAAAV ETGTIAATGG SPFAKIKLQI  240
KDKKPRTSHV SQNKKQYRTL DPDPTHQYQS QRKLCFKDFA IALSKNSALK QVFPQDVEEA  300
AILLMELSCG FIHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450839.10.0putative GATA transcription factor 22 isoform X1
RefseqXP_006475925.10.0putative GATA transcription factor 22 isoform X1
TrEMBLA0A067GKD20.0A0A067GKD2_CITSI; Uncharacterized protein
TrEMBLA0A2H5PZ500.0A0A2H5PZ50_CITUN; Uncharacterized protein
TrEMBLV4WCB40.0V4WCB4_9ROSI; Uncharacterized protein
STRINGXP_006475925.10.0(Citrus sinensis)
STRINGXP_006450839.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16433713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-15GATA family protein