PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008930m
Common NameCICLE_v10008930mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 322aa    MW: 35896.2 Da    PI: 7.6194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008930mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30156215159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh+
  Ciclev10008930m 156 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHP 215
                      58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-30150217IPR003657WRKY domain
PROSITE profilePS5081127.669151217IPR003657WRKY domain
SuperFamilySSF1182906.93E-26154217IPR003657WRKY domain
SMARTSM007741.1E-35156216IPR003657WRKY domain
PfamPF031066.8E-25157215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDSTWVDTSL DLNLNLLNHS SEVPKREFKG DHFAEFEERA SVKQETGILV EELNRISTEN  60
KKLNEMLSIL CKNYNNLRQQ YMDLMNKNTE NEVGISKKRK AESEDHCHTI GFNVHATESS  120
TSTDEESCKR PKDNNTKAKV SRFYVRASDS NSTLIVKDGY QWRKYGQKVT RDNPSPRAYF  180
KCSFAPSCPV KKKVQRSAED PSILVATYEG EHNHPQPTDS KAELSLSPSH VATIGNPIHV  240
SAASSMLSAS PTATLDMIQP GFLFDDAKKS SVQQIEAPAI HQILVQQMAS NLTKDPNFTA  300
ALAAAISGRF ADQARTQRWS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-211552171374WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.207840.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6811201e-130AY681120.1 Citrus limon putative WRKY transcription factor 40 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450293.10.0probable WRKY transcription factor 40
RefseqXP_006483469.10.0probable WRKY transcription factor 40
TrEMBLA0A067FW740.0A0A067FW74_CITSI; Uncharacterized protein
TrEMBLA0A2H5NW280.0A0A2H5NW28_CITUN; Uncharacterized protein
TrEMBLV4TSJ20.0V4TSJ2_9ROSI; Uncharacterized protein
STRINGXP_006483469.10.0(Citrus sinensis)
STRINGXP_006450293.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.16e-87WRKY DNA-binding protein 40