PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10008887m

Common Name

CICLE_v10008684mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 332aa MW: 36517 Da PI: 8.1455

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10008887m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00042	221	259	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Ciclev10008887m 221 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 259 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.725	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-10	219	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.02E-6	219	263	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-7	223	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MNRGILQSSP VQQMMAGNPN WWNINSMRPP TPQASPFLPP PANNLFPQYP SCYDNQEQLP 60 ESWSQLLLGR MVDEEDKSGM VGHFQTKKVE NWEEQILHHS SSSANSVVNV KQEINPAANS 120 YFYGHANDDH FQAAAASAAT KTTSWSQVMP PAAAASSPNN KSCVTSFSSN MLDFTSTKAD 180 ARHPPPDRSS ECNSTASGGV AKKARVQSSS SSSTQSTFKV RKEKLGDRIT ALHQLVSPFG 240 KTDTASVLLE AIGYIRFLQS QIEALSLPYL GSSGSAAMRQ QQHSQHPVQG ERNCIFPEDP 300 GQVLELYWIH IYCCLLKLGL WRNLKFIKVT T*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.3492	0.0	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006451209.1	0.0	transcription factor bHLH68 isoform X1
Refseq	XP_006475662.1	0.0	transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	8e-72	BH068_ARATH; Transcription factor bHLH68
TrEMBL	V4UEE8	0.0	V4UEE8_9ROSI; Uncharacterized protein
STRING	XP_006475662.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	5e-58	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10008887m
Entrez Gene	18055974

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]