PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10008866m

Common Name

CICLE_v10008866mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 336aa MW: 39520.5 Da PI: 4.2834

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10008866m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.1	2e-12	108	192	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e +L+e+ e+ +l+r++l+ +W evs+k+ ++ ++e++ qC++ ++ l+++ykk+k ++ ++s ++++f++++ Ciclev10008866m 108 WTEHEAFVLLEIWGERFLQLGRKSLRSEDWVEVSEKVtEALKVEKTEAQCRQMMDVLKRKYKKEKVKVEQMGVNDS-KWVFFKKMD 192 ***********************************77899*******************88888755555.8*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.4E-18	107	194	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDDTEDDARY PPKPYSLNRQ KLPSYSRPIK NRYQYEEEDE DDEIEDRIEE ENEEEEGGYH 60 VQFNDQSAYR HNFNESENFE RYPKRQRLRS SGSGYQLAPR SVKLSYDWTE HEAFVLLEIW 120 GERFLQLGRK SLRSEDWVEV SEKVTEALKV EKTEAQCRQM MDVLKRKYKK EKVKVEQMGV 180 NDSKWVFFKK MDMLMDMRKE SGGLACGIDS GEYVFMDTNV YLDRSNGFDE MRDSPSESEV 240 EEEEDDSNEG SLASLKMLAD SVNKFGDIYE KIENSKREQM MELEKMRMDF QKELELQKKQ 300 ILERAQLEIE KIREGDDDGD TDDGGDGDSM GNFSE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006451106.1	0.0	trihelix transcription factor ASIL1
TrEMBL	V4UPH6	0.0	V4UPH6_9ROSI; Uncharacterized protein
STRING	XP_006451106.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-93	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Ciclev10008866m
Entrez Gene	18055843