PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008824m
Common NameCICLE_v10008821mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 345aa    MW: 39143.5 Da    PI: 5.9081
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008824mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.6e-072843152354
                      SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  Ciclev10008824m 284 PYPTEEDKARLVQETGLQLKQINNWFINQRKR 315
                      8*****************************87 PP
2ELK29.22.1e-10236257122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++++++++E++
  Ciclev10008824m 236 ELKHELKQGYKEKIVDIREEIL 257
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.8E-1671115IPR005540KNOX1
PfamPF037904.6E-1773112IPR005540KNOX1
SMARTSM012561.7E-25124179IPR005541KNOX2
PfamPF037919.4E-19129178IPR005541KNOX2
SMARTSM011886.1E-4236257IPR005539ELK domain
PfamPF037897.6E-7236257IPR005539ELK domain
PROSITE profilePS512139.969236256IPR005539ELK domain
PROSITE profilePS5007111.321256319IPR001356Homeobox domain
SuperFamilySSF466897.27E-16258322IPR009057Homeodomain-like
SMARTSM003893.4E-10258323IPR001356Homeobox domain
CDDcd000862.37E-10259318No hitNo description
Gene3DG3DSA:1.10.10.601.5E-24263320IPR009057Homeodomain-like
PfamPF059201.8E-18276315IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAYNDQQNMQ RLVLPTTSTN PPPPTWLNNA VRHHHHQNND DDDDDEEEAP KNNKNNSASN  60
DNGRAEDWET VKCKAEIVGH PLYEQLLSAH VSCLRIATPV DQLPKIDAQL SRSRDVLAKY  120
SAVANGRVLD DKELDQFMTH YVLLLYSFKE QLQQHVRVHA MEAVMACWDL EQSLQSLTGV  180
SPGEGTGATM SDDDEDQVDS DTNFFDGSLD GPDSMGFGPL VPTESERSLM ERVRHELKHE  240
LKQGYKEKIV DIREEILRKR RAGKLPGDTT SLLKAWWLSH AKWPYPTEED KARLVQETGL  300
QLKQINNWFI NQRKRNWHAN PSSSTASKSK RKSNAGKSSN ENFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12259324873Homeobox protein PKNOX1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.98690.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453704.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480001e-166KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLV4WJH80.0V4WJH8_9ROSI; Uncharacterized protein
STRINGXP_006453706.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-153KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]