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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10008812m |
Common Name | CICLE_v10008812mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
NAC |
Protein Properties |
Length: 348aa MW: 38890.6 Da PI: 8.6568 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10008812m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 167.3 | 5.2e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrF Ptdeel+v+yL++kv+g++++l ++i e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++
Ciclev10008812m 14 LPPGFRFYPTDEELLVQYLCRKVAGQHFSL-QIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT 106
79***************************9.89***************7777799***********************************9999 PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
+g++vg+kk Lvfy g+apkg+kt+W+mheyrl
Ciclev10008812m 107 -EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
.999****************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MGVPETDPLS QLNLPPGFRF YPTDEELLVQ YLCRKVAGQH FSLQIIGEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLF EPSRKNGSSK LDDWVLCRIY KKHSGSQKPV SATSVSSSKE 180 HSNGSCSSSS SHLDDVLESL PEIDDRFFAL PRMNSLKTLQ QEDNKVNNLQ HLGSGNFDWA 240 SLAGLHSVPE FVSAAQTQTT TQSHGVACYA NNDFYVPSMP QMYHVNSGRV GNSVEEEVQS 300 GLRNQRVDNS GLFQHNSAVL TQPNFCSPVD PYGLRHPTQS SGFGFRH*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |