PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10008684m | ||||||||
Common Name | CICLE_v10008684mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 374aa MW: 40648.3 Da PI: 7.8346 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00075 | 233 | 269 | 14 | 55 |
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Ciclev10008684m 233 EKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 269 56778888899999887.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.417 | 219 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.70E-5 | 231 | 273 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-9 | 231 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-7 | 233 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
MNRGILQSSP VQQMMAGNPN WWNINSMRPP TPQASPFLPP PANNLFPQYP SCYDNQEQLP 60 ESWSQLLLGR MVDEEDKSGM VGHFQTKKVE NWEEQILHHS SSSANSVVNV KQEINPAANS 120 YFYGHANDDH FQAAAASAAT KTTSWSQVMP PAAAASSPNN KSCVTSFSSN MLDFTSTKAD 180 ARHPPPDRSS ECNSTASGGV AKKARVQSSS SSSTQSTFKT RTQAQTFVMV RKEKLGDRIT 240 ALHQLVSPFG KTDTASVLLE AIGYIRFLQS QIEALSLPYL GSSGSAAMRQ QQHSQHPVQG 300 ERNCIFPEDP GQLLNDNCMK RKGTSDHQES QEEVKKSLRS RGLCLVPVSC TLQVGSDNGA 360 DYWAPALGGG GLR* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ccl.3492 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451209.1 | 0.0 | transcription factor bHLH68 isoform X1 | ||||
Refseq | XP_006475662.1 | 0.0 | transcription factor bHLH68 isoform X1 | ||||
Swissprot | Q8S3D1 | 1e-105 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | V4UJM8 | 0.0 | V4UJM8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006451210.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1872 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29100.1 | 4e-94 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10008684m |
Entrez Gene | 18055974 |
Publications ? help Back to Top | |||
---|---|---|---|
|