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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10008633m | ||||||||
Common Name | CICLE_v10008633mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 382aa MW: 42413.4 Da PI: 6.7724 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.4 | 2.5e-08 | 137 | 157 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd C FaHg Ciclev10008633m 137 ACPDFRK-GSCKKGDACEFAHG 157 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.3E-5 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.554 | 133 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-6 | 136 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-6 | 137 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2 | 167 | 190 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.113 | 167 | 191 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MMLGEAHRPN PTILVPPWPQ LPDDPTADNI FSPHSLNSNA NGSPEYSNLY HIPETYAALH 60 RYLPSNDPDL DSDSDMSGLD PDSPVDAYSC DHFRMYEFKV RKCARGRSHD WTECPYAHPG 120 EKARRRDPRK YHYSGTACPD FRKGSCKKGD ACEFAHGVFE CWLHPARYRT QPCKDGGGCK 180 RRVCFFAHTP DQLRILPQQS PRSASASDSP SCAKTLPFLS SPESASPPPS PRTESPMSHS 240 LSRSLGTSSI NEMMASFRNL QLGKVKSLPS SWNMQVGGVG GSPGYGSPRG SMLRPGFCSL 300 PSTPTRTPTR PGIGYPDIFN TCWEEEEEEP VMERVESGRD LRAKMFERLS KENSLERVDP 360 YPTNAVDPDL GWITELVNEA K* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024033892.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | O82199 | 1e-144 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | V4UEU9 | 0.0 | V4UEU9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006451362.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 4e-93 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10008633m |
Entrez Gene | 18056156 |
Publications ? help Back to Top | |||
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