PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008515m
Common NameCICLE_v10008515mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 401aa    MW: 43463.7 Da    PI: 6.7658
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008515mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.42.4e-16216272359
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                      +lkr rr+ +NRe+ArrsR+RK+a ++eLe  v+ L++eN +L k+     +++++ 
  Ciclev10008515m 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA 272
                      69******************************************7766666666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.3E-16214278IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.415216279IPR004827Basic-leucine zipper domain
PfamPF001709.3E-14217271IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-12218271No hitNo description
SuperFamilySSF579594.66E-12218268No hitNo description
CDDcd147029.74E-22219269No hitNo description
PROSITE patternPS000360221236IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MMKDHAAAGV AERLGSGPGE IMKRSPSELA FEEFFSSEIE PTPTPTPTPN PNPNPTVDDH  60
NINNNINNNI ANIHQHQHLH HHFFQDGHDQ HLSFAFKNHR DDEDMAMKGI ISSNTGTGGV  120
SVTTGNLHKR WSQSQNPNSS KRSTIVTTTT IDSQSSICGS VTGNWSAATP TSGDKTNTID  180
CKARLASSGS SADHSDDEDL EIEAGPCEQS TDHPIDLKRI RRMVSNRESA RRSRKRKQAH  240
MQELELQVER LKGENATLYK QFTDAAQQYK EANTNNRVLK SDVEALRAKV RLAEDVVSVG  300
SLTCGLNQLL QSHLSPVLQP INSIITSHNN NNNNNIGRHQ LANVSPTLTV PGNGASFSAI  360
SSTSGHRSSL GVGLANPDIH NSNNTAVNDA LSCVSSDIWP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230236RRSRKRK
2230237RRSRKRKQ
3232237SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.204720.0abscission zone
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450106.10.0basic leucine zipper 9 isoform X1
SwissprotQ9FUD34e-61BZIP9_ARATH; Basic leucine zipper 9
TrEMBLV4ULV10.0V4ULV1_9ROSI; Uncharacterized protein
STRINGXP_006450106.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.15e-55basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]