PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007917m
Common NameCICLE_v10007917mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 548aa    MW: 60393 Da    PI: 7.1973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007917mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30293351259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+++d +++ +tYeg+Hnh+
  Ciclev10007917m 293 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAsGCPVRKQVQRCSQDRTILMTTYEGNHNHP 351
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33277353IPR003657WRKY domain
SuperFamilySSF1182902.09E-27285353IPR003657WRKY domain
PROSITE profilePS5081129.998287353IPR003657WRKY domain
SMARTSM007745.7E-36292352IPR003657WRKY domain
PfamPF031062.3E-26294351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MAKDNDLING EDHRDEKRVV NEMNFFAHDD SQHHHLKASD DRQETFRVDR VKTESSSAFD  60
EHEERIKLDI NTGLNLSTAN TTNERSRNVD TGISSRNIEH KKHDKKIELA VLRADLNKMS  120
VENQRLRSLL NQVNNDYRAL QLHLCALTQR EPTGKLAGST AGREMINDEN VGVARQFMDL  180
GQAGKDDHKV SLCNSSEDTT RFREFKIVES MEARSDDEIV ALDDHQMGKR NISDRTEREV  240
TPDDGQRAKK VARFNNNNSS RDVEQAASQS QTTSLIRRAR VSVRARSEAS MISDGCQWRK  300
YGQKMAKGNP CPRAYYRCTM ASGCPVRKQV QRCSQDRTIL MTTYEGNHNH PLPPAAMSMA  360
STTSAAASML LSGSMPSADG LIMSPNLLAK NNVLPFSPSS ASLSASAPFP TVTLDLTHSP  420
NPLQFQRPLG QFHFTSPNNL PHNFVPMSHG LGPALIDNNY QSNFLGLLSS LGLEHPYDSA  480
QNRIQAASLI SDNISAATAA ITSDPGFTAA LVSAIASIIG NNDHQNHNGN NNSPSTARNT  540
SEKIEQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-23279355176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452416.20.0probable WRKY transcription factor 31
TrEMBLV4USZ60.0V4USZ6_9ROSI; Uncharacterized protein
STRINGXP_006452416.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2557533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-71WRKY family protein