PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007843m
Common NameCICLE_v10007843mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 581aa    MW: 63962.4 Da    PI: 6.455
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007843mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.99.8e-1322105791373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+a+s+++ +  ++l+++ +  +s  g+p+qRl ay++eAL ar  +s+s++y+al+++e +   s++ l+++++++e++P+lkf+
  Ciclev10007843m 210 LKQLLIACAKALSENNINDFDKLIEKARGAVSVGGEPIQRLGAYMVEALVARKEKSGSNIYRALRCREPE---SKDLLSYMHILYEICPYLKFG 300
                      689******************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +++aN aI ea ++e+++HiiDf+i qG+QW++LlqaLa++p+g+p++RiTg+++p s+  + + le++g+rLa + +++++ +efn+ +    
  Ciclev10007843m 301 YMAANGAIAEACKTEDCIHIIDFQIAQGTQWMTLLQALAAKPSGAPRVRITGIDDPVSKyaRGDGLEAVGRRLAAISQKFNILVEFNP-IPVFA 393
                      ********************************************************999999**************************.68889 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       d++l++L v+pgEalaVn+ lqlh+++desv+l+++rd +L+++ksl+Pkvv++veqe+++n++ Fl rf+e+l++y a+f+s+++++pr+++
  Ciclev10007843m 394 PDVTLDMLGVRPGEALAVNFPLQLHHTPDESVDLNNPRDGLLRMIKSLNPKVVTLVEQESNTNTAAFLPRFVETLNCYLAMFESIDVTMPRDQK 487
                      99******************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      eri+vE+++l+r+ivnv+aceg+er+erhe l+kWr+r+++aGF++ pls+++++ ++ llr ++ + y++ e +g+++lgWkdr+Lvs+SaW
  Ciclev10007843m 488 ERINVEQHCLARDIVNVIACEGRERVERHELLGKWRSRFTMAGFRQRPLSSYVNSVIRNLLRCYS-EHYTLVETDGAMLLGWKDRALVSASAW 579
                      *************************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.289184561IPR005202Transcription factor GRAS
PfamPF035143.4E-129210579IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MDSRQIIGCG VTSAGISYSS SCPTVPSIPN RLFGPLKFDV GNSPNSPFSN QFECDTITSL  60
SDSQEQHSPS DNPSGLSPSC DSSLESNSYF HQLSPAVDSL ILFSGGTSYL QNANSSQKIK  120
HVLQELETVL MGPDEEEAAK PNTSYGGSSK PQAPGHRPRS WSQEHHGSHV IQPQPSFISR  180
YRQSAEGAQI ENSQMAIGES SLQGFPSGNL KQLLIACAKA LSENNINDFD KLIEKARGAV  240
SVGGEPIQRL GAYMVEALVA RKEKSGSNIY RALRCREPES KDLLSYMHIL YEICPYLKFG  300
YMAANGAIAE ACKTEDCIHI IDFQIAQGTQ WMTLLQALAA KPSGAPRVRI TGIDDPVSKY  360
ARGDGLEAVG RRLAAISQKF NILVEFNPIP VFAPDVTLDM LGVRPGEALA VNFPLQLHHT  420
PDESVDLNNP RDGLLRMIKS LNPKVVTLVE QESNTNTAAF LPRFVETLNC YLAMFESIDV  480
TMPRDQKERI NVEQHCLARD IVNVIACEGR ERVERHELLG KWRSRFTMAG FRQRPLSSYV  540
NSVIRNLLRC YSEHYTLVET DGAMLLGWKD RALVSASAWH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-6021757925377Protein SCARECROW
5b3h_D5e-6021757925377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.87240.0fruit
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4406470.0JF440647.1 Citrus medica var. sarcodactylis GRAS family transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452128.10.0chitin-inducible gibberellin-responsive protein 1
RefseqXP_006475287.10.0chitin-inducible gibberellin-responsive protein 1-like
RefseqXP_024953185.10.0chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLV4TXN90.0V4TXN9_9ROSI; Uncharacterized protein
STRINGXP_006475287.10.0(Citrus sinensis)
STRINGXP_006452128.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]