PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007837m
Common NameCICLE_v10007837mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 582aa    MW: 63063.4 Da    PI: 8.7934
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007837mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017110130323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++C+k F r  nL+ H r H
  Ciclev10007837m 110 CEICNKGFQRDQNLQLHRRGH 130
                      *******************88 PP
2zf-C2H211.60.00084184206123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H + +
  Ciclev10007837m 184 WKCEKCSKKYAVQSDWKAHSKIC 206
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-5107130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.81E-7107130No hitNo description
SMARTSM003550.11108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.824108130IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SMARTSM0035582149179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4172205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.81E-7179204No hitNo description
SMARTSM00355140184204IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MKMMKGLLVE ENMSNLTSAS GEVIASSGSR VETGTNFYAQ HSFSSTNEAT PPSKKKRSLP  60
GNPGINFSLF NFIFFQVWGL IDFVLFESDP DAEVIALSPK SLMATNRFLC EICNKGFQRD  120
QNLQLHRRGH NLPWKLKQRT NKVERKKVYV CPEPTCVHHD PSRALGDLTG IKKHFSRKHG  180
EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YKCDCGKLFS RRDSFITHRA FCDVLAEESA  240
RTITVNPLFS PSQQQPNSSA THMLNFPSHH HHQLQSQGLQ ALQLQAVKIE DNNQQHHIPP  300
WLACPSSIDL SSQLFSGNIF SRSLLHNENQ SASPSPNPNS TSFAPFEPPG TTGSQHTSAT  360
ALLQKAAQMG ATMSTQPSAL PAPVLRVPVP HQTHHMPAGS ASTAGAAGSS SGLGLSSRED  420
LASGFVHNNL SSFGNKAAAA ANPAYMEQFA ASTTTTTTGP GTAPSLLHDM MMSSFSCTNG  480
FDGSSSSFDD ALNGILNPKG YGDFHHAQLS RNNHETRDNN GGGAGGSNAG GSDGLTRDFL  540
GLKTFPHSHR DFVNIAGLDQ INPSSSSTFG PQNQNPRTWQ G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34180241364Zinc finger protein JACKDAW
5b3h_F5e-34180241364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134146KLKQRTNKVERKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450859.10.0protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-114IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLV4UIM50.0V4UIM5_9ROSI; Uncharacterized protein
STRINGXP_006450860.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.13e-99indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]