PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007410m
Common NameCICLE_v10007362mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 888aa    MW: 100423 Da    PI: 8.5097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007410mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08231275246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT eE++ l+  +++ G  +W  Ia+ +g++Rt+ qc  r+q 
  Ciclev10007410m 231 NPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQR 275
                      69*****************************************96 PP
2Myb_DNA-binding48.52e-15283329148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r  WT+eEde+l  av+ +G  +W ++a+t+  gRt+ qc +rw+k l
  Ciclev10007410m 283 RREWTKEEDEQLRIAVEAYGESNWQSVASTLK-GRTGTQCSNRWNKTL 329
                      678****************************9.************975 PP
3Myb_DNA-binding513.3e-16337380246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      grW ++Ed++l+ a  ++G+++Wk+Ia+ ++ gRt  qc++rw +
  Ciclev10007410m 337 GRWNPDEDQRLIVATMLFGPRNWKKIAQFVP-GRTQVQCRERWVN 380
                      8******************************.***********87 PP
4Myb_DNA-binding43.38.3e-14388430145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r  WT++Ed++l  a+k++G   W+++a+ ++  Rt++qc  rw 
  Ciclev10007410m 388 RSEWTEQEDLRLEAAIKEHGYC-WSKVASALP-SRTDNQCWRRWK 430
                      789*****************99.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0014129226IPR001005SANT/Myb domain
PROSITE profilePS500906.249130224IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-10132148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-10197231IPR009057Homeodomain-like
SuperFamilySSF466891.25E-16206278IPR009057Homeodomain-like
PROSITE profilePS500909.036225277IPR017877Myb-like domain
SMARTSM007173.8E-8229279IPR001005SANT/Myb domain
PfamPF002496.7E-8231275IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-10232278IPR009057Homeodomain-like
CDDcd001673.19E-6232277No hitNo description
SuperFamilySSF466896.01E-20260332IPR009057Homeodomain-like
PROSITE profilePS5129422.109278333IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-18281333IPR009057Homeodomain-like
SMARTSM007173.3E-13282331IPR001005SANT/Myb domain
CDDcd001673.80E-11285329No hitNo description
PfamPF139216.3E-15286347No hitNo description
SMARTSM007171.2E-14335384IPR001005SANT/Myb domain
PROSITE profilePS5129413.741335382IPR017930Myb domain
SuperFamilySSF466892.04E-25335429IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-22337388IPR009057Homeodomain-like
CDDcd001675.17E-12338382No hitNo description
PROSITE profilePS5129422.59383436IPR017930Myb domain
SMARTSM007171.8E-13387435IPR001005SANT/Myb domain
PfamPF002495.3E-12388430IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-17389431IPR009057Homeodomain-like
CDDcd001673.98E-10390432No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MMKHLQIYHS LVLLLLSGIN LMNVIDFLCC HRSSLVTSQS LLRCLLMPLR RIGHIRSLSE  60
VSCRKVTGRA LSQKKDLRVQ LISSSCNSRK SKDSEGTNKK LSALNYGPAE NSQVANYKMA  120
MSKSPLSLHR KKWSKKENEN LRKGIRQQFQ EMMLQLSVDR FSVPEGSATD TNSLDSILAS  180
IKDLEVTPEM IRDFLPKVNW DQVASMYVQG RSGAECEARW LNFEDPLINH NPWTVEEEKS  240
LLLIIQEKGI TDWFDIAASL GTNRTPFQCL ARYQRSLNAC ILRREWTKEE DEQLRIAVEA  300
YGESNWQSVA STLKGRTGTQ CSNRWNKTLH PSRERQGRWN PDEDQRLIVA TMLFGPRNWK  360
KIAQFVPGRT QVQCRERWVN SLDPSVKRSE WTEQEDLRLE AAIKEHGYCW SKVASALPSR  420
TDNQCWRRWK ALHPEAVPLF LEAKKIQKTA LVSNFVDRER ERPALRPNDF IPIPMLESAF  480
QPEEPNASKK RKRKSSRKPE SGKENDDCNT QKKIKPNRCR KEAEVCSEEV LGITNSDVMD  540
ISDQQDATQK KKKVKPRSTK KKAGCGSVAT EKSSKKGSKS RPSAELDESS QSILLQPPKK  600
ENQRNTNDDD NNFSLEDTDK ARRQGHGIKR CNEPSGECQG LACSSCQQDA SKTSKPRSKS  660
HFKNRLQASD GDNIPLACFL HNKPKKKKLE VPKIADQPCS SNGEETMGSL LPFETVDQQS  720
NEQPILSQMQ NGEVHTCHNA GTPEDMSLCK MRSSHLKDMQ IMVVSDECIG EDKVEGGVTD  780
KVEGATTSPS EPVSEAMPDI NLEDEIEACD FTLASWLNRS SLSTQSSLNN MQNVLASDME  840
LERGDEVKGA TITPHEPVRE PMSNNHKDDI DDADIPLAFL RRKLKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-332024239159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-332024239159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1488493KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033739.10.0myb-like protein L isoform X1
TrEMBLV4UQZ80.0V4UQZ8_9ROSI; Uncharacterized protein
STRINGXP_006451665.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-167myb domain protein 4r1