PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007362m
Common NameCICLE_v10007362mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 963aa    MW: 109027 Da    PI: 8.1343
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007362mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08306350246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT eE++ l+  +++ G  +W  Ia+ +g++Rt+ qc  r+q 
  Ciclev10007362m 306 NPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQR 350
                      69*****************************************96 PP
2Myb_DNA-binding48.32.2e-15358404148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r  WT+eEde+l  av+ +G  +W ++a+t+  gRt+ qc +rw+k l
  Ciclev10007362m 358 RREWTKEEDEQLRIAVEAYGESNWQSVASTLK-GRTGTQCSNRWNKTL 404
                      678****************************9.************975 PP
3Myb_DNA-binding50.93.6e-16412455246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      grW ++Ed++l+ a  ++G+++Wk+Ia+ ++ gRt  qc++rw +
  Ciclev10007362m 412 GRWNPDEDQRLIVATMLFGPRNWKKIAQFVP-GRTQVQCRERWVN 455
                      8******************************.***********87 PP
4Myb_DNA-binding43.29.1e-14463505145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r  WT++Ed++l  a+k++G   W+++a+ ++  Rt++qc  rw 
  Ciclev10007362m 463 RSEWTEQEDLRLEAAIKEHGYC-WSKVASALP-SRTDNQCWRRWK 505
                      789*****************99.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0014204301IPR001005SANT/Myb domain
PROSITE profilePS500906.249205299IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-10207223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-10272306IPR009057Homeodomain-like
SuperFamilySSF466891.39E-16281353IPR009057Homeodomain-like
PROSITE profilePS500909.036300352IPR017877Myb-like domain
SMARTSM007173.8E-8304354IPR001005SANT/Myb domain
PfamPF002497.4E-8306350IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-10307353IPR009057Homeodomain-like
CDDcd001674.50E-6307352No hitNo description
SuperFamilySSF466896.7E-20335407IPR009057Homeodomain-like
PROSITE profilePS5129422.109353408IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-18356408IPR009057Homeodomain-like
SMARTSM007173.3E-13357406IPR001005SANT/Myb domain
CDDcd001675.72E-11360404No hitNo description
PfamPF139216.9E-15361422No hitNo description
SuperFamilySSF466892.11E-25410504IPR009057Homeodomain-like
PROSITE profilePS5129413.741410457IPR017930Myb domain
SMARTSM007171.2E-14410459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-21412463IPR009057Homeodomain-like
CDDcd001678.10E-12413457No hitNo description
PROSITE profilePS5129422.59458511IPR017930Myb domain
SMARTSM007171.8E-13462510IPR001005SANT/Myb domain
PfamPF002495.9E-12463505IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-17464506IPR009057Homeodomain-like
CDDcd001676.02E-10465507No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MFFSDNFNAD NNKSSVEVHE SASVVASGED KNSNNLFENR IDSCEEARND ETLTNLPQPC  60
ASSTEWHQSD ECNRLSVLSQ KQSSNFPKSA QVFIDAIKKN RSYQKFIRSK LTQIESRIEE  120
NNKLKERVKI LKDFQVSCRK VTGRALSQKK DLRVQLISSS CNSRKSKDSE GTNKKLSALN  180
YGPAENSQVA NYKMAMSKSP LSLHRKKWSK KENENLRKGI RQQFQEMMLQ LSVDRFSVPE  240
GSATDTNSLD SILASIKDLE VTPEMIRDFL PKVNWDQVAS MYVQGRSGAE CEARWLNFED  300
PLINHNPWTV EEEKSLLLII QEKGITDWFD IAASLGTNRT PFQCLARYQR SLNACILRRE  360
WTKEEDEQLR IAVEAYGESN WQSVASTLKG RTGTQCSNRW NKTLHPSRER QGRWNPDEDQ  420
RLIVATMLFG PRNWKKIAQF VPGRTQVQCR ERWVNSLDPS VKRSEWTEQE DLRLEAAIKE  480
HGYCWSKVAS ALPSRTDNQC WRRWKALHPE AVPLFLEAKK IQKTALVSNF VDRERERPAL  540
RPNDFIPIPM LESAFQPEEP NASKKRKRKS SRKPESGKEN DDCNTQKKIK PNRCRKEAEV  600
CSEEVLGITN SDVMDISDQQ DATQKKKKVK PRSTKKKAGC GSVATEKSSK KGSKSRPSAE  660
LDESSQSILL QPPKKENQRN TNDDDNNFSL EDTDKARRQG HGIKRCNEPS GECQGLACSS  720
CQQDASKTSK PRSKSHFKNR LQASDGDNIP LACFLHNKPK KKKLEVPKIA DQPCSSNGEE  780
TMGSLLPFET VDQQSNEQPI LSQMQNGEVH TCHNAGTPED MSLCKMRSSH LKDMQIMVVS  840
DECIGEDKVE GGVTDKVEGA TTSPSEPVSE AMPDINLEDE IEACDFTLAS WLNRSSLSTQ  900
SSLNNMQNVL ASDMELERGD EVKGATITPH EPVREPMSNN HKDDIDDADI PLAFLRRKLK  960
KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-332774989159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-332774989159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1563568KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033739.10.0myb-like protein L isoform X1
TrEMBLV4UKX30.0V4UKX3_9ROSI; Uncharacterized protein
STRINGXP_006451665.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.20.0myb domain protein 4r1