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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10007077m | ||||||||
Common Name | CICLE_v10007077mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 201aa MW: 22228.8 Da PI: 10.2308 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 30 | 50 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs++ L H++ H Ciclev10007077m 30 CNFCNKIFSTSQALGGHQNAH 50 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.22E-7 | 25 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-5 | 26 | 54 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.572 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGGTSNPQAN ESSSHESIRK KQPKQKGFLC NFCNKIFSTS QALGGHQNAH KQERALAKRR 60 KEMDMGALGH HHYPYYPYSS SAAHQNPNFY GSLFNRSSPL GVSMQPMIRK PSYPWVPLWD 120 RFGGHGKTVM NAQLAYDKMR LESVMEAQNG GVRAEFRNLN GSSMAAKRPN NDGGDRLKGN 180 SSSQSNQHDD DSGLDLSLKL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421473.2 | 1e-150 | zinc finger protein 3 | ||||
TrEMBL | A0A067ETN7 | 1e-147 | A0A067ETN7_CITSI; Uncharacterized protein | ||||
TrEMBL | V4RKQ2 | 1e-148 | V4RKQ2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421473.1 | 1e-148 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8738 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 6e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10007077m |
Entrez Gene | 18031975 |