PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10006940m

Common Name

CICLE_v100069401mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 281aa MW: 31525.7 Da PI: 7.9112

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10006940m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.8e-13	81	125	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er+RR ++N++f+ Lr l+P++ + K + a+++ A+eYIk+Lq Ciclev10006940m 81 ISERQRRVEMNDKFAVLRNLVPNP----NNKGDRASVVGDACEYIKELQ 125 67*******************9....99****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.119	74	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-16	77	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.46E-11	77	128	No hit	No description
SMART	SM00353	9.3E-12	80	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-14	81	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-10	81	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGISVTNSKP QSSLYDPIFH SNLPSQQPPL FGEFFQSSNY EDGNGGHFNN CVLDEFNGDI 60 GMAFTGTKRV KATGKAKKPI ISERQRRVEM NDKFAVLRNL VPNPNNKGDR ASVVGDACEY 120 IKELQRSINE LKPLVERKRF AREIRSNNER HNIEGCDHDM KPAPLVDPNN TASLRSSWLQ 180 RKSKDIEIDV RIVDDEVTVK ILQRKKIDNS LLFLSKVFDE MQLDLQHVAG GHIGDYYSFL 240 LNSKIHEGSC VYAGAIVNKL IEIMDRQYAA ASIAPINCSN *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006421646.2	0.0	transcription factor bHLH91, partial
TrEMBL	V4SD39	0.0	V4SD39_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006421646.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06170.2	4e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10006940m
Entrez Gene	18031853