PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10006887m

Common Name

CICLE_v10006887mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 253aa MW: 28494.3 Da PI: 8.3476

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10006887m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.5e-08	78	124	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + +Er+RR+++ + Lr+llP + ++K s ++ +A +YI++L Ciclev10006887m 78 KDIERQRRQHLSMLHASLRSLLPLqS---IKGKRSISDHINEARNYINYL 124 679*******************55...******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-9	72	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.937	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.36E-7	72	129	No hit	No description
Pfam	PF00010	1.6E-5	78	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-7	78	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MFPPGQSDDP FPFHYNPYQE HSNIQQDQIL QGQALLERNI NSSKMGKGQQ HKLLFVATTK 60 VNDGNSDNNN NKKMILRKDI ERQRRQHLSM LHASLRSLLP LQSIKGKRSI SDHINEARNY 120 INYLNKNIQE LGLKRDKLKN LSELGAVGHG SSNWDNCLQN CVTIHPYSGG VEIVINSVHK 180 EENLKLSKVM EAVLEEGLDV IRCASTQADE GFFHTIQAEV GDLTCVDLRV LQLKLDHSIK 240 GPPKEHVPSS FK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024047265.1	1e-178	transcription factor bHLH118
TrEMBL	V4SDH3	0.0	V4SDH3_9ROSI; Uncharacterized protein
STRING	XP_006421796.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17143	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	2e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10006887m
Entrez Gene	18032565