PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006771m
Common NameCICLE_v10006771mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 248aa    MW: 27887.8 Da    PI: 10.2094
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006771mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-1394139247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+ E+  ++++ k+lG+g+Wk I++ + ++Rt+ q+ s+ qky
  Ciclev10006771m  94 KPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKY 139
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565217IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.14888144IPR017930Myb domain
SuperFamilySSF466893.59E-1790144IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1791143IPR006447Myb domain, plants
SMARTSM007173.1E-1092142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-1094138IPR009057Homeodomain-like
PfamPF002494.1E-1194139IPR001005SANT/Myb domain
CDDcd001673.96E-995140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRKCSHCGHN GHNSRTCHAK GCFKLFGVNI LDQIQDLPSM KKSVKKSYSV GNLQSLGGEF  60
NGHVDEGREF DGDVDEGYLS DGPIHTKHER KRGKPWTEAE HRVFLEGLKL LGKGDWKGIS  120
KNFVTTRTPT QVASHAQKYF LRQASNDKKN RRTSLFDMPL KESYPVPCNG RSNIVNSSKS  180
FISDQRPNYY ACMPMPAGMH KSLTRAPQSS QRSVRTTQEC PKLSMERDFL DLKIGLPQSP  240
KTARFII*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043898.11e-162probable transcription factor At5g61620
SwissprotQ9FKF92e-53M5162_ARATH; Probable transcription factor At5g61620
TrEMBLV4S3870.0V4S387_9ROSI; Uncharacterized protein
STRINGXP_006421517.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-41MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]