PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Ciclev10006694m

Common Name

CICLE_v10006694mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 117aa MW: 13411.1 Da PI: 5.0818

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10006694m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	33.4	1.3e-10	31	64	62	95
DUF260 62 vyeAearardPvyGavgvilklqqqleqlkaela 95 yeA+ r+rdPvyG++g++ +lq+q+++l+a+ + Ciclev10006694m 31 DYEANSRIRDPVYGCAGTVCHLQKQVSELQADQQ 64 5****************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	9.1E-9	30	64	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MGESGDRRLS HQTTCDRRLS HQALDCKLIM DYEANSRIRD PVYGCAGTVC HLQKQVSELQ 60 ADQQQNLIAL ICMEMAQSQE QVLHRHQQQQ PQQLFIDTSC FLDEYSLGST WEPLWT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024952279.1	3e-47	LOB domain-containing protein 1-like
TrEMBL	V4S6A9	1e-80	V4S6A9_9ROSI; Uncharacterized protein
STRING	XP_006421125.1	2e-81	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-13	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Ciclev10006694m
Entrez Gene	18032807