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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10006639m | ||||||||
Common Name | CICLE_v10006639mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 178aa MW: 19749.7 Da PI: 7.9832 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.5e-09 | 11 | 62 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++++h +E+ RR+++ + Lr+llP ++K s ++ +Av+Y+k+L Ciclev10006639m 11 KKMTHRDIEKLRRQEMSVLHASLRSLLPLeY---IKGKRSMSDHMNEAVNYVKDL 62 789**************************77...*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.03E-8 | 8 | 66 | No hit | No description |
PROSITE profile | PS50888 | 13.097 | 10 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-13 | 10 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-7 | 11 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-9 | 11 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDGSTNDSQK KKMTHRDIEK LRRQEMSVLH ASLRSLLPLE YIKGKRSMSD HMNEAVNYVK 60 DLKNKINELS SRRDELQKEL ASRVSDSGSS SNNCTPSRVV IHSCLGGLVV MISSGFREQG 120 FPVSRVLEVL IEQGLDVVNC VSTKVNQVLL LTIHTEVSDT TCIDLPGLQQ KLTEVIP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024044351.1 | 1e-126 | transcription factor bHLH120 | ||||
Swissprot | Q9FLI0 | 3e-48 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | V4S852 | 1e-125 | V4S852_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421795.1 | 1e-126 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-49 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10006639m |
Entrez Gene | 18032660 |
Publications ? help Back to Top | |||
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