PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006628m
Common NameCICLE_v10006628mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 246aa    MW: 27745.3 Da    PI: 6.6318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006628mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.8e-1076128155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ +h  +Er+RR+++ + ++ Lr llP  +   ++K s ++   + v+Y+k+L+
  Ciclev10006628m  76 KKLMHRDVERQRRQEMATLYASLRALLPLEF--IKGKRSISDQMNEGVNYVKYLE 128
                      5789*************************65..********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1172143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.4375127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-776128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.50E-776132No hitNo description
Gene3DG3DSA:4.10.280.101.9E-877145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MFPLHSGDEL FIKVSSNSHQ QDKIPQDLIS GHASEASSII TNDMGKSHRG QSFSMETDKI  60
PSDNYNSNNS NYNNNKKLMH RDVERQRRQE MATLYASLRA LLPLEFIKGK RSISDQMNEG  120
VNYVKYLEKK IKELGVKRDE LKRLSNLSIS ASQIETSDQN DTSPINRFVV HQSLVGIEIA  180
YSCGYLEQEL PLSKVLEVLL DEGLCVVNCV STRVDERLLH TIQAEVKDPS SFSLSDLQQK  240
LTQVK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421794.10.0transcription factor bHLH36
SwissprotQ9FLI11e-49BH036_ARATH; Transcription factor bHLH36
TrEMBLV4U7021e-180V4U702_9ROSI; Uncharacterized protein
STRINGXP_006421794.11e-180(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.15e-52bHLH family protein