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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10006625m | ||||||||
Common Name | CICLE_v10006625mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 191aa MW: 22236.9 Da PI: 10.5036 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 73.3 | 6.2e-23 | 54 | 177 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p Gf F P+dee+++ yLk+k+ +++l+l+ i++++iy + P+dL +k +++ +yfF+ + y+ g+ ++ ++ g++++++ Ciclev10006625m 54 PLGFSFCPSDEEMLTIYLKNKLLNRPLSLNANaINSLNIYMYGPHDLSVIFKRpGQTTMYFFTYPRL-YEIGSSAHN-------QNAGSSEKIY 139 89************************8886656**************96555536668899988755.666655555.......3578889998 PP NAM 94 sk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +++l g kktLvfy+g ++ +++kt+W+++ey++ Ciclev10006625m 140 GSkSKTLLGYKKTLVFYQGklHQVNSRKTSWIIEEYKI 177 87456679*********8855788899*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-23 | 48 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.394 | 53 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-14 | 54 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MDMDRQMMMM RRMMNMAMDQ PMTRRNLNTI PLRRNLNRRR PPIIRRNLNS NVIPLGFSFC 60 PSDEEMLTIY LKNKLLNRPL SLNANAINSL NIYMYGPHDL SVIFKRPGQT TMYFFTYPRL 120 YEIGSSAHNQ NAGSSEKIYG SKSKTLLGYK KTLVFYQGKL HQVNSRKTSW IIEEYKIGLN 180 IIQSESDDPI * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | V4U634 | 1e-137 | V4U634_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421439.1 | 1e-138 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23968 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15170.1 | 8e-13 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10006625m |
Entrez Gene | 18031398 |