PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006500m
Common NameCICLE_v10006500mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 112aa    MW: 12649.5 Da    PI: 10.5399
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006500mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.74.7e-161563149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ien+  r  tfsk r gi KKA+EL +L++ae+ +++fs +gk +++
  Ciclev10006500m 15 KKIENEDDRMMTFSKHRSGIYKKASELVTLTGAEIGIVLFSLSGKPFTF 63
                     68******************************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.909767IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-20766IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-23893IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-16929IPR002100Transcription factor, MADS-box
PfamPF003196.1E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MLAKKTRGRQ NIEMKKIENE DDRMMTFSKH RSGIYKKASE LVTLTGAEIG IVLFSLSGKP  60
FTFGHPSLEA VANRFLGSNQ KHPNDNTHPL VEVHRRVRIN ELNQQHNELL G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421348.14e-72agamous-like MADS-box protein AGL61
TrEMBLV4S2P72e-76V4S2P7_9ROSI; Uncharacterized protein
STRINGXP_006421342.14e-77(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.13e-32AGAMOUS-like 57