PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006113m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 158aa    MW: 17249.7 Da    PI: 8.1537
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006113mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260149.39.8e-47151141100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+a+l
  Ciclev10006113m  15 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQL 108
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      al+++e
  Ciclev10006113m 109 ALAQAE 114
                      *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.31414115IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-4615112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MIMKESGRKQ GALSPCAACK LLRRRCAQDC VFAPYFPADE PQKFASVHKV FGASNVNKML  60
QELPEHQRSD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDSLQAQLAL AQAEVVHMRM  120
RQVSPSSSSS HNLPANSMDH MVDHHHQANI GGSLWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-51111167112LOB family transfactor Ramosa2.1
5ly0_B8e-51111167112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422217.21e-114LOB domain-containing protein 4
RefseqXP_006475320.11e-114LOB domain-containing protein 4-like
SwissprotQ9SHE95e-70LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A2H5NQT31e-113A0A2H5NQT3_CITUN; Uncharacterized protein
STRINGXP_006475320.11e-113(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-62LOB domain-containing protein 4