PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006022m
Common NameCICLE_v10006022mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20540.4 Da    PI: 9.7866
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006022mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.1e-131454949
                     HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       +tfskRr  i K A+EL +L++ e+a+++fs++gk y++
  Ciclev10006022m 14 MIITFSKRRSWIYKNASELVTLTGSEIAIVVFSQSGKPYTF 54
                     568*************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-11757IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-16873IPR002100Transcription factor, MADS-box
PfamPF003191.3E-151654IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.8861658IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-62035IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-63556IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAAKKTKGRQ KIEMIITFSK RRSWIYKNAS ELVTLTGSEI AIVVFSQSGK PYTFGHPSVE  60
AVANRFLGMN QLPNDNIHSL VVGHRQVRIN ELNQQHNELR RQLDEEKEQE KILTQMRRGK  120
ETQPRMWETP VDEHNLQEQL QMDSAVDDLH QIFLAKLNER AAAAAASSPV APSLYFHHK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492960.11e-93agamous-like MADS-box protein AGL62
RefseqXP_006492962.11e-93agamous-like MADS-box protein AGL62
RefseqXP_006492963.11e-93agamous-like MADS-box protein AGL62
TrEMBLV4SC711e-131V4SC71_9ROSI; Uncharacterized protein
STRINGXP_006421331.11e-132(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-29AGAMOUS-like 62