PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005658m
Common NameCICLE_v10005658mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 263aa    MW: 28982.7 Da    PI: 8.0068
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005658mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19179213135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Ciclev10005658m 179 CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL 213
                      *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.5E-17173223IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-14176236No hitNo description
PROSITE profilePS5011411.78176209IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.0E-15177211IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.85E-13178226No hitNo description
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
PfamPF003207.4E-17179213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MESLDLQVCC IDDLLDFNIN DDECGKPTKR PRNALSSVNR NGCDFDVFEA GDDTDHLFPE  60
CAEEELEWLS NFPTVETFVD ISSNPNILKQ QSPNSVLENS NSSSSTSTNG STITNGNNNS  120
NSIIMNCCGN LRVPVRARSK LRTRCRRELL NQEAWWGSVH GSVKAAKPVV SKVIIGRKCQ  180
HCGAEKTPQW RAGPMGPKTL CNACGVRFKS GRLVPEYRPA NSPTFSSELH SNSHRKVVEM  240
RRQKQMMGIE LGVLGVKPVD KG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420528.10.0GATA transcription factor 1 isoform X1
SwissprotQ8LAU91e-53GATA1_ARATH; GATA transcription factor 1
TrEMBLV4RIC80.0V4RIC8_9ROSI; Uncharacterized protein
STRINGXP_006420528.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-49GATA transcription factor 1