PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 316aa MW: 36160 Da PI: 6.9065

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10005465m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.2	1.4e-48	24	152	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv +yL++kv++k+l++ e ik++diyk++PwdLpk ++ ++e yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s Ciclev10005465m 24 LPGFRFHPTDEELVGFYLRRKVDKKPLSI-ELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSD 116 59*************************.89***********777778899*********************************9 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLv+y+g+a kg+ktdW+m+e+rl Ciclev10005465m 117 ggeGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRL 152 6655555*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-53	23	184	IPR003441	NAC domain
PROSITE profile	PS51005	51.195	23	184	IPR003441	NAC domain
Pfam	PF02365	1.7E-24	25	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MNGQNIKIDH HCYRDDHEAD DRQLPGFRFH PTDEELVGFY LRRKVDKKPL SIELIKQIDI 60 YKHDPWDLPK ISSTPDNEGY FFCKRGRKYR NSVRPNRVTG SGFWKATGID KPVYSDGGEG 120 QDCIGLKKTL VYYRGTAGKG TKTDWMMNEF RLPSDDRSGN TNVTNAKTTL PEAEVWTICR 180 VFKRNVSSRK YTNWKEQSSA RRQSSVTELP SATITYSTES NNQEEAYISF ENPGIHRHTD 240 NLKPTAVHQI NEISQFSSVE QLSGNIPSNP YESMASSSSH PHANGNDFHE LFTQENWDEL 300 RSVVEFALEC PNFSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-45	25	190	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-45	25	190	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-45	25	190	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-45	25	190	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-45	25	190	22	174	NAC domain-containing protein 19
3swm_B	3e-45	25	190	22	174	NAC domain-containing protein 19
3swm_C	3e-45	25	190	22	174	NAC domain-containing protein 19
3swm_D	3e-45	25	190	22	174	NAC domain-containing protein 19
3swp_A	3e-45	25	190	22	174	NAC domain-containing protein 19
3swp_B	3e-45	25	190	22	174	NAC domain-containing protein 19
3swp_C	3e-45	25	190	22	174	NAC domain-containing protein 19
3swp_D	3e-45	25	190	22	174	NAC domain-containing protein 19
4dul_A	3e-45	25	190	19	171	NAC domain-containing protein 19
4dul_B	3e-45	25	190	19	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00353	DAP	Transfer from AT3G12910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006490488.1	0.0	transcription factor JUNGBRUNNEN 1
Refseq	XP_024040744.1	0.0	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	3e-82	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A067E676	0.0	A0A067E676_CITSI; Uncharacterized protein
TrEMBL	V4RMF5	0.0	V4RMF5_9ROSI; Uncharacterized protein
STRING	XP_006490488.1	0.0	(Citrus sinensis)
STRING	XP_006422208.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	8e-89	NAC family protein

Link Out ? help Back to Top
Phytozome	Ciclev10005465m
Entrez Gene	18032929

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]