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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10005450m | ||||||||
Common Name | CICLE_v10004984mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 320aa MW: 36155.1 Da PI: 5.7035 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.2 | 7.9e-33 | 192 | 246 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav++LGG e+AtPk +l+lm+v+ Lt++hvkSHLQkYR+ Ciclev10005450m 192 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRT 246 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.21 | 189 | 249 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.4E-18 | 191 | 247 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-31 | 191 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.2E-25 | 192 | 246 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-11 | 194 | 245 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.7E-13 | 277 | 304 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MSNPQQISAS SSRFPDNMHF SSVSPHGRYS QNSPFISQSL RDEARLRSTH FSPSEGQPTP 60 LINHPEENKD NSWCIDPLQD FLDFPENDPG QTGLLESNTG DIASDDRAKR IEWWADQLIS 120 VEDGPEPNWS EVLADVNVTD ARQKVLKPST DIPTQHPQVH PQVHPQGQQH QPVSNEEFHA 180 VANPLSMTPA NKSRMRWTPE LHEAFVEAVN RLGGGERATP KGVLKLMNVE NLTIYHVKSH 240 LQKYRTARHR PESSEGTSEK KSNPTEDMKS LDTKTTMSIT EALRLQMEVQ KRLHEQLEVQ 300 YCMSVDYSDL QKYTEVLGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-30 | 192 | 250 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-30 | 192 | 250 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-30 | 192 | 250 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-30 | 192 | 250 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-30 | 192 | 250 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-30 | 192 | 250 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-30 | 192 | 250 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-30 | 192 | 250 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420651.1 | 0.0 | protein PHR1-LIKE 1 isoform X4 | ||||
TrEMBL | V4U3U1 | 0.0 | V4U3U1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006420652.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 1e-80 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10005450m |
Entrez Gene | 18033520 |