 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Ciclev10005341m |
| Common Name | CICLE_v10005341mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
NAC |
| Protein Properties |
Length: 345aa MW: 39084.5 Da PI: 4.5753 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10005341m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 182.1 | 1.4e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
lppGfrFhPtdeelv +yL +k++g+++el e+i+e+d+yk+ePwdLp k + +++ ewyfFs+rdkky++g+r+nrat++gyWkatgkd++v
Ciclev10005341m 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEIDLYKHEPWDLPdKsYLPGKDMEWYFFSPRDKKYPNGSRTNRATRAGYWKATGKDRTV 98
79****************************.99**************95335556888************************************ PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+s +++ vg+kktLv+y+grap+g +t+Wvmheyrl
Ciclev10005341m 99 HS-HKQSVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
**.999****************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MAPMSLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE IDLYKHEPWD LPDKSYLPGK 60
DMEWYFFSPR DKKYPNGSRT NRATRAGYWK ATGKDRTVHS HKQSVGMKKT LVYYRGRAPH 120
GIRTNWVMHE YRLLDPLSGA ASSSLKDSYA LCRVFKKTIQ IPKAKESLQE AMGNNNNDAE 180
NQTETVGFSS DEQMLGDDTS GREAEENDYS KFPSDTSSSD FTQATPTEAG NVNADEFQAP 240
FISDEANSAV NMYSLGVDFT TNLIQDIQMP SYANLQYQCP FPPLELEDFP QINIAETKPS 300
KPEIFDGCLM YDKCRDYMNG ALEEIYYLCS AQDTNNSVAL SMQD*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 2e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC187861 | 3e-37 | AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence. |
