PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10005329m | ||||||||
Common Name | CICLE_v10005329mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 347aa MW: 37886.3 Da PI: 5.5703 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.4 | 9.4e-29 | 47 | 141 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg+ +++p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e+ +++++s +++ ++l Ciclev10005329m 47 RWTRQEILVLIQGKRVAENRVRRGRaagmgfgsgQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRNDL 140 8**********************97778888888*********************************************999999999999998 PP trihelix 86 e 86 + Ciclev10005329m 141 R 141 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.4 | 47 | 113 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.2E-11 | 47 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-5 | 47 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MALEQLSLAR TPVDGETDGV NNGVEQRTTT ASIDGGDDGC KAPRLPRWTR QEILVLIQGK 60 RVAENRVRRG RAAGMGFGSG QIEPKWASVS SYCKRHGVNR GPVQCRKRWS NLAGDFKKIK 120 EWESHVKDGT ESFWVMRNDL RRERKLPGFF DREVYDILDG AATVASSASP GLGLALAPAE 180 ETTTDEAVFD SGRSAAADDG LFSDFEPEET TGTPVKDDAP AEAAPAAAKP ISATMPIPEK 240 QYQPNLRGCH GQGTTTEKQP APEIGSTSQD GRKRKRFTVD GDEEMSNMQY QLIDVLERNG 300 KMLTAQLEAQ NNSFQLDREQ RKDHADSLVA VLNKLADALG RIADKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420771.1 | 0.0 | trihelix transcription factor ASR3 isoform X1 | ||||
Refseq | XP_024957969.1 | 0.0 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 1e-126 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A067F3Y6 | 0.0 | A0A067F3Y6_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PXD2 | 0.0 | A0A2H5PXD2_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SAN3 | 0.0 | V4SAN3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006487537.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006420771.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6557 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-124 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10005329m |
Entrez Gene | 18033074 |
Publications ? help Back to Top | |||
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