PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005260m
Common NameCICLE_v10005260mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 359aa    MW: 41027.3 Da    PI: 4.1074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005260mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.71.1e-19141451128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk.......kvkaeek...ewyfFskrdkkyatgkrknratksgyW 83 
                      lp+GfrF+Ptdee+v++yLk  +++ ++   + i+ +d+y    Pw++ +       +   +++   e  f++ ++ k+a+ +r +r++  g+W
  Ciclev10005260m  14 LPVGFRFNPTDEEIVKHYLKGGAATLPCL--KDIEYCDVYGDkSPWEIFQleknnpdN---HDNdygENIFYVYTKLKKASPNRISRVAGCGTW 102
                      79******************999998854..469*****97648***95333443322...2233447789999999999999*********** PP

              NAM  84 katgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + + +  +++++     ++ ++g k+   f         k  W+mhey+l
  Ciclev10005260m 103 QFQKRPVQIYDAdpnenDNVVIGYKRKYSFK-------AKEPWIMHEYSL 145
                      **********975554444446666666664.......5678******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-244172IPR003441NAC domain
PROSITE profilePS5100523.75614172IPR003441NAC domain
PfamPF023651.8E-1515145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MTTTMKRSII SCFLPVGFRF NPTDEEIVKH YLKGGAATLP CLKDIEYCDV YGDKSPWEIF  60
QLEKNNPDNH DNDYGENIFY VYTKLKKASP NRISRVAGCG TWQFQKRPVQ IYDADPNEND  120
NVVIGYKRKY SFKAKEPWIM HEYSLAAGKE RSSPCGGDDD GDNFVFCRII NKSKTGNEHQ  180
EAKAKAETEA ESSGGYVGSN NLMIDDNKIN QFELGLQADD QALLKYGLAL DDDAEEVTSF  240
ARNNEDDVML LDDELEPILH IDTKDWNLTM LQKYFMDDDD IDRVDESSRA SSSVEFANYL  300
QNDEGVMTLE YSEDFGYRIE ENDYLRMNEV QQPAVVLQES EVDEFIEELL MNDVCDNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006489766.10.0NAC domain-containing protein 67-like
TrEMBLV4U2M20.0V4U2M2_9ROSI; Uncharacterized protein
STRINGXP_006420244.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3272522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-18NAC-like, activated by AP3/PI