PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 373aa MW: 41039.8 Da PI: 6.5653

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10005203m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.5	1.4e-33	193	251	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers+edp++v++tYeg+H h+ Ciclev10005203m 193 LDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHP 251 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-35	178	253	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-29	185	253	IPR003657	WRKY domain
PROSITE profile	PS50811	33.27	188	253	IPR003657	WRKY domain
SMART	SM00774	4.0E-40	193	252	IPR003657	WRKY domain
Pfam	PF03106	7.6E-27	194	251	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEKREAETSI SMANSTLLSD ENPAGGYGLG GIFDMSCEGD KWDAASFGFM DLLNVQNHNT 60 NYNNQDFGGD SFLFSNTLHP PPPAAAPILP PPPPQPSPAP ESSEVLNNPA TPNSSSISSS 120 SNEAAANNTN NEEQTDTNNN NNNNNKNSSS KAGDDDEQEQ DKTKKQLKPK KKNQKKQREP 180 RFAFMTKSDI DHLDDGYRWR KYGQKAVKNS PHPRSYYRCT SAGCGVKKRV ERSSEDPTIV 240 VTTYEGQHIH PSPITPRGSI GIMANDHNST ATFGASSSFV IPQPQYLQLH HQQQPYIYSS 300 SPPLNLITSN ATSTTANSSF NNPTFSSFVH HHQAERRNTM ISPSQASLFH DHGLLQDIVP 360 SQMRNEPKDE HI*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEKREAETSI SMANSTLLSD ENPAGGYGLG GIFDMSCEGD KWDAASFGFM DLLNVQNHNT  60
NYNNQDFGGD SFLFSNTLHP PPPAAAPILP PPPPQPSPAP ESSEVLNNPA TPNSSSISSS  120
SNEAAANNTN NEEQTDTNNN NNNNNKNSSS KAGDDDEQEQ DKTKKQLKPK KKNQKKQREP  180
RFAFMTKSDI DHLDDGYRWR KYGQKAVKNS PHPRSYYRCT SAGCGVKKRV ERSSEDPTIV  240
VTTYEGQHIH PSPITPRGSI GIMANDHNST ATFGASSSFV IPQPQYLQLH HQQQPYIYSS  300
SPPLNLITSN ATSTTANSSF NNPTFSSFVH HHQAERRNTM ISPSQASLFH DHGLLQDIVP  360
SQMRNEPKDE HI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	186	253	10	77	Probable WRKY transcription factor 4
2lex_A	4e-26	186	253	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006419357.1	0.0	probable WRKY transcription factor 48
Swissprot	Q9FGZ4	7e-62	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	V4RXW7	0.0	V4RXW7_9ROSI; Uncharacterized protein
STRING	XP_006419357.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	3e-49	WRKY DNA-binding protein 48

Link Out ? help Back to Top
Phytozome	Ciclev10005203m
Entrez Gene	18032092

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]