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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Ciclev10005102m |
| Common Name | CICLE_v10005102mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
MYB |
| Protein Properties |
Length: 402aa MW: 44840.7 Da PI: 4.8349 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10005102m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl
Ciclev10005102m 28 RGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 75
89******************************99************97 PP
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| 2 | Myb_DNA-binding | 52.4 | 1.3e-16 | 81 | 126 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+eE++ ++++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
Ciclev10005102m 81 RGNFTQEEEDTIIRLHESLGNR-WSKIASQLP-GRTDNEIKNVWNTHL 126
89********************.*********.************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MVGSLKIFLL SQMGKGRAPC CDKSQVKRGP WSPGEDLRLI TFIQKHGHEN WRALPKQAGL 60
LRCGKSCRLR WINYLRPDVK RGNFTQEEED TIIRLHESLG NRWSKIASQL PGRTDNEIKN 120
VWNTHLKKRL SFRDVKKDQE SKESSSISSP SSSSSSTIIS SGKRRADTEL DEHQCDQNNY 180
VPKKPREGHG SMTVSEKLVQ QSSETEESNQ INTSKGVVMT TKELLDSSCS SDNSVVSNSS 240
QVDATRPKDQ MGTSQFGFSE PYDVAIGLNN LEEVNKPEII SISDTGLEIP LECDFDFWSM 300
LDNLGPFQSH EVEASQSTSF GEASDNSREV DSRTWFQYLE NELGLEATTE DEIQNSAKVA 360
AAATADPIPQ ETYETLLKPE VDPGVTYFQL WNASLQSSVC E*
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