PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004862m
Common NameCICLE_v10004862mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 482aa    MW: 52691.8 Da    PI: 7.374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004862mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09292339455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Ciclev10004862m 292 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 339
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575122No hitNo description
CDDcd000839.85E-11286343No hitNo description
SuperFamilySSF474593.27E-17286357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17288356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-6292339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEKEDLLMNE GVNSTPPTWS SCNFSSEKVI TNCCLNPNWD YSMDQSDPFE AALSSIVSSP  60
AASNAPTTCS VIIPAGGGGD NVMIRELIGR LGSICNSGEV LPQSYIQAQN NNNSNTCCYS  120
TPLNSPPLPK LNLSMIRGSK SSNNLPIPAA DPGFAERAAR LSCFAGSQMN MNSSVSASDS  180
KKLRVSRSST PESNNNADSK EGSSLSEQIT SQTVTDSNPR KRKSIQRPKA KETPPTNDPK  240
VVAENPEDSN SMRSKQDENK SDSSKTKDNS KPVEPPKDYI HVRARRGQAT DSHSLAERVR  300
REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRMDLNM  360
EALLSKDLFQ SCGYVQHSLY PGDCSVQTFP SRYQPQQGSH LTSSGINNNA ENQFSINALN  420
SSLHRNHNIQ LPPINGHGEV GPRVPSLWDD DLQSLVQMGF NQNQPRSLNG SMATTQMKIE  480
M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421053.10.0transcription factor bHLH62
TrEMBLA0A2H5QLN60.0A0A2H5QLN6_CITUN; Uncharacterized protein
TrEMBLV4RJN50.0V4RJN5_9ROSI; Uncharacterized protein
STRINGXP_006421053.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-85bHLH family protein