PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004453m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 709aa    MW: 77697.8 Da    PI: 5.0984
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004453mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.52e-1253104151
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH.HHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv.WFqNr 51 
                      ++k +++t++q++eLe++F+++++p++++r eL+++lgL+   ++v W+ N+
  Ciclev10004453m  53 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLENLLIYVcWYLNQ 104
                      79999***********************************988876677776 PP
2START170.79.4e-542164402206
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                      la++a++el+k+a+a++p+W ks     +  n++e++++f++  +     + +ea+r++g+v+ ++  l e+++d + +W e+++    + +t+
  Ciclev10004453m 216 LALTAMDELIKMAEADSPLWIKSLdggrDVFNQEEYMRTFSPCIGmkpngFVTEASRETGMVIINSSALIETMMDAN-RWAEMFPcmiaRSATT 308
                      6899*********************999999**********9988999*9***************************.*******999988888 PP

                      EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      +v+ s        galq+mvae+q+lsplvp R   f+R+++q+ +g+w++vdvS+d +++  +  ++   ++lpSg+++++++n++skvtw+e
  Ciclev10004453m 309 DVLLSPsvtgtknGALQVMVAEFQVLSPLVPvRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIE 402
                      8876667999999************************************************98889999999********************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      h++++++++h l r+l++sg+ +ga +wvatlqrqce+
  Ciclev10004453m 403 HAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCEC 440
                      ************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-1437104IPR009057Homeodomain-like
SuperFamilySSF466891.24E-1046112IPR009057Homeodomain-like
PROSITE profilePS500719.7550111IPR001356Homeobox domain
SMARTSM003891.5E-552115IPR001356Homeobox domain
CDDcd000864.26E-105391No hitNo description
PfamPF000464.3E-1053104IPR001356Homeobox domain
PROSITE profilePS5084838.84206443IPR002913START domain
SuperFamilySSF559617.28E-29207440No hitNo description
CDDcd088752.99E-108210439No hitNo description
SMARTSM002341.1E-32215440IPR002913START domain
PfamPF018522.9E-46216440IPR002913START domain
SuperFamilySSF559613.85E-18468702No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MDAGEMGLIG EQFDPSVVGR IREEEFESRS GSDNVEGASG DDQEANEDGP PRKKKYHRHT  60
PHQIQELESF FKECPHPDEK QRSELSRRLG LENLLIYVCW YLNQTQMERH ENKLSLPGSV  120
SNYELQQLRI ENARLKDELG RICILANKFL GRPLTSSAGP ISPQGVNSSL ELGVGRNGFG  180
GVANIPGSMM QTSLEFVEGP VMSLTMPHDR NMLIDLALTA MDELIKMAEA DSPLWIKSLD  240
GGRDVFNQEE YMRTFSPCIG MKPNGFVTEA SRETGMVIIN SSALIETMMD ANRWAEMFPC  300
MIARSATTDV LLSPSVTGTK NGALQVMVAE FQVLSPLVPV RQAKFLRFCK QHIEGVWAVV  360
DVSIDTNREG LSADPFQTYR RLPSGFVVQD VPNNYSKVTW IEHAEYDESI VHHLCRPLLS  420
SGMGFGAPKW VATLQRQCEC LAVLMSSTMT VQDQSGISPI GRKSMLKLAQ RMTYNFCSGV  480
CASSVRKWDK LCVGNVGEDV RVLTRKNVND PGEPPGVVLC AATTVWLPMT RQRLFDFMRD  540
ERMRSEWDIL SNGGPLQEMV HIAKGQAPGN CASLLRAGAM NANDSGMLIL QETWNDSSGS  600
LVVYAPVDVP SMSMVMNGGD STCVALLPSG FAILPDGYFG HGGLINSNGT MVKTEGSSNE  660
SGGCLLTVGF QILVNSLPTA KLTVESVETV NNLISCTIQK IKAAVLET*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490345.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A067EY320.0A0A067EY32_CITSI; Uncharacterized protein
STRINGXP_006490345.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]