PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10004233m

Common Name

CICLE_v10004233mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 1020aa MW: 114089 Da PI: 7.4456

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10004233m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.3	4.7e-09	246	305	21	81
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 + r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y Ciclev10004233m 246 STRAKTRADKDREVAEFLQRHGVNRDAKTSGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 305 556788899999*************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	2.38E-14	844	1005	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	1.1E-6	862	1004	No hit	No description
CDD	cd00180	8.65E-11	868	1000	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1020 aa Download sequence Send to blast
MGDNKGDTTK KQQSQQQPQQ LQQQQQQPQQ QQLSSSPKNP LEESTEKGQH HHQQPPAVVV 60 TGAPYISAPL YVPIGPTSSS PFEQQFEPVN PKRQRYNSSQ WKLLPSPSQQ QQQKQQAQMA 120 ILTTESSPSP TTLPITNPQS QAHTTTASSS DTASSPPHSP IPSLSAASGQ ETNRPELLGE 180 QFHPQFRKGK YVSPVWKPNE MLWLARAWRI QYQGGGGSNG SGSSSRVDHH QPESTGQGEV 240 AAAAQSTRAK TRADKDREVA EFLQRHGVNR DAKTSGTKWD NMLGEFRKVY EWERGGEREQ 300 VGKSYFRLSP YERKLHRLPA SFDEEVFEEL SQFMGSRMRS TSQSRAASSV FVSSDHDNRS 360 TRALPPPPPF KEDELSLSAR AKQLVMTSGG EAFFHGGRGS LLGFESSLDV GSKELRRIGR 420 IRMTWEESVS LWAEEGEHQR GRIKLQGSSF LNADELTFFD DAMVACNMEA FEEGTLRGFS 480 VDRFVPGQQV KVFGRRKSSS GSASASSAGF FERVQFPFTE PSIRFTPWEY QDPSDYYVGC 540 LRVPPTTLPS LFELSWHLQE PPPEEFRFPI RKDVYRDLPQ GKEIFFTTST ELLDCRAITY 600 DILSPIIRGN NPSLSFSTAA SRDSFIGLWD DCINRVVSKF CSSEMVIVRK PSSSSISSPE 660 PLQDQWPNVT GFVRNLCLWR GEETDQLKEG QLDPSSSIVE KLLWTYMDLP YLFGYYAVGY 720 IVTFCALSRS QDRVVRTDLY SLDLSSPVER LKALIPCYRI AGLLPLLADR CFNSSSSIIS 780 NGGGGYKQYP FSDFERIDLG SGNIIEMTPN TVTRFFSSKR KWAAVKQIYD FLDHRIPHAE 840 AIYESSEKDL ALVFKPRGCK LKPTSCEQLV EALKYVTKAL VALHDLSFMH KDLSWDKVMR 900 RSDRENEWFV SGFDEAASAP QIYPQLVAAV AGGVEARGRH APEMGRPGLH GVKVDVWGVG 960 QLVKTCGLSN VPKMLRELQN RCLDQNPELR PTAADCYHHL LQLQSSLSVA AASSSTAPY*

Sequence ? help Back to Top

Protein Sequence Length: 1020 aa Download sequence Send to blast

MGDNKGDTTK KQQSQQQPQQ LQQQQQQPQQ QQLSSSPKNP LEESTEKGQH HHQQPPAVVV  60
TGAPYISAPL YVPIGPTSSS PFEQQFEPVN PKRQRYNSSQ WKLLPSPSQQ QQQKQQAQMA  120
ILTTESSPSP TTLPITNPQS QAHTTTASSS DTASSPPHSP IPSLSAASGQ ETNRPELLGE  180
QFHPQFRKGK YVSPVWKPNE MLWLARAWRI QYQGGGGSNG SGSSSRVDHH QPESTGQGEV  240
AAAAQSTRAK TRADKDREVA EFLQRHGVNR DAKTSGTKWD NMLGEFRKVY EWERGGEREQ  300
VGKSYFRLSP YERKLHRLPA SFDEEVFEEL SQFMGSRMRS TSQSRAASSV FVSSDHDNRS  360
TRALPPPPPF KEDELSLSAR AKQLVMTSGG EAFFHGGRGS LLGFESSLDV GSKELRRIGR  420
IRMTWEESVS LWAEEGEHQR GRIKLQGSSF LNADELTFFD DAMVACNMEA FEEGTLRGFS  480
VDRFVPGQQV KVFGRRKSSS GSASASSAGF FERVQFPFTE PSIRFTPWEY QDPSDYYVGC  540
LRVPPTTLPS LFELSWHLQE PPPEEFRFPI RKDVYRDLPQ GKEIFFTTST ELLDCRAITY  600
DILSPIIRGN NPSLSFSTAA SRDSFIGLWD DCINRVVSKF CSSEMVIVRK PSSSSISSPE  660
PLQDQWPNVT GFVRNLCLWR GEETDQLKEG QLDPSSSIVE KLLWTYMDLP YLFGYYAVGY  720
IVTFCALSRS QDRVVRTDLY SLDLSSPVER LKALIPCYRI AGLLPLLADR CFNSSSSIIS  780
NGGGGYKQYP FSDFERIDLG SGNIIEMTPN TVTRFFSSKR KWAAVKQIYD FLDHRIPHAE  840
AIYESSEKDL ALVFKPRGCK LKPTSCEQLV EALKYVTKAL VALHDLSFMH KDLSWDKVMR  900
RSDRENEWFV SGFDEAASAP QIYPQLVAAV AGGVEARGRH APEMGRPGLH GVKVDVWGVG  960
QLVKTCGLSN VPKMLRELQN RCLDQNPELR PTAADCYHHL LQLQSSLSVA AASSSTAPY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ453914	2e-87	DQ453914.1 Toona ciliata var. pubescens clone TC12 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006421798.1	0.0	uncharacterized protein LOC18033560
TrEMBL	V4RLF6	0.0	V4RLF6_9ROSI; Uncharacterized protein
STRING	XP_006421798.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Ciclev10004233m
Entrez Gene	18033560