PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10004036m

Common Name

CICLE_v10004036mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 362aa MW: 41300.3 Da PI: 6.6879

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10004036m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.6	1.7e-10	75	106	3	34
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 + k +rr+++NReAAr+sR+RKka++++Le Ciclev10004036m 75 SEKTQRRLAQNREAARKSRLRKKAYVQQLESS 106 6799*************************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-7	67	121	No hit	No description
SMART	SM00338	2.1E-5	73	131	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.347	75	117	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.1E-8	76	110	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-6	77	112	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.8E-29	164	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSSPSSQLAT LRRMSIYEPF HQISMWGDTF HGDASPNTGS STIVQVDTRL DNQTEYLSHN 60 SVEPSRSDQE ANKPSEKTQR RLAQNREAAR KSRLRKKAYV QQLESSRLKL AQLEQELDRA 120 RRQGIYTGST SDGSHFGLSG NINPGITAFE MEYSHWVEEQ NRQIYELRNA LQKHITDIEL 180 RILVENGLNH YNNLFRMKAD AAKADVLSLI SGMWRTSTER FFQWIGGFRP SELLNILMPQ 240 LEPLTEQQLI DVCNLRQSSQ QAEDALQQGI DKLQQSLVQI ITEDQSSSEI YQSQMVAAAE 300 KLEALESFVN QADHLRQQTM QQMYRVLTTR QAARALLALG EYFHRLRALS SLWAAQHLES 360 A*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSSPSSQLAT LRRMSIYEPF HQISMWGDTF HGDASPNTGS STIVQVDTRL DNQTEYLSHN  60
SVEPSRSDQE ANKPSEKTQR RLAQNREAAR KSRLRKKAYV QQLESSRLKL AQLEQELDRA  120
RRQGIYTGST SDGSHFGLSG NINPGITAFE MEYSHWVEEQ NRQIYELRNA LQKHITDIEL  180
RILVENGLNH YNNLFRMKAD AAKADVLSLI SGMWRTSTER FFQWIGGFRP SELLNILMPQ  240
LEPLTEQQLI DVCNLRQSSQ QAEDALQQGI DKLQQSLVQI ITEDQSSSEI YQSQMVAAAE  300
KLEALESFVN QADHLRQQTM QQMYRVLTTR QAARALLALG EYFHRLRALS SLWAAQHLES  360
A*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434079.1	0.0	transcription factor TGA7 isoform X2
Swissprot	Q93ZE2	1e-162	TGA7_ARATH; Transcription factor TGA7
TrEMBL	V4V5P2	0.0	V4V5P2_9ROSI; Uncharacterized protein
STRING	XP_006434079.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-155	bZIP family protein

Link Out ? help Back to Top
Phytozome	Ciclev10004036m
Entrez Gene	18042937

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]