PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003996m
Common NameCICLE_v10003996mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 799aa    MW: 89049.4 Da    PI: 6.0088
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003996mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.8e-2090145156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Ciclev10003996m  90 KKRYHRHTARQIQEMEALFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 145
                      688899***********************************************998 PP

2START156.71.8e-492895142206
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                      la + ++elvk+  a+ep+W +s   eng+evl  +e ++              +++ea r+++vv+m++ +lv  +ld + +W e ++    +
  Ciclev10003996m 289 LAASSMNELVKMCHAAEPLWIRSN--ENGKEVLNLEEHARMfpwplnlkqhsseFRTEATRDTAVVIMNSITLVDAFLDAN-KWMELFPsivaR 379
                      78899*******************..**********99888****************************************.******99999* PP

                      EEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
            START  79 aetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                      a+t++vi sg     g l+lm+aelq+lsplvp R+  f+Ry++q  ++g+w++vd   ds  +++ ++s+   +++pSg++i++++ng+s+vt
  Ciclev10003996m 380 AKTVQVIASGvssasGSLHLMYAELQVLSPLVPtREAFFLRYCQQnVEEGTWAVVDFPMDSFHDNNIQPSFPLYRRRPSGCIIQDMPNGYSRVT 473
                      *********************************************99******************9999888888******************* PP

                      EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      wveh++ +++ +h+++ + v s +a+ga++w++ lqrqce+
  Ciclev10003996m 474 WVEHAEIEEKPVHQIFSHYVYSAMAFGASRWLSVLQRQCER 514
                      ***************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-1980148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-2185153IPR009057Homeodomain-like
PROSITE profilePS5007117.37887147IPR001356Homeobox domain
SMARTSM003899.9E-1988151IPR001356Homeobox domain
CDDcd000862.44E-1890148No hitNo description
PfamPF000465.4E-1890145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PROSITE profilePS5084845.456279517IPR002913START domain
SuperFamilySSF559613.16E-30280516No hitNo description
CDDcd088752.62E-113283513No hitNo description
SMARTSM002344.3E-31288514IPR002913START domain
PfamPF018524.9E-41289514IPR002913START domain
SuperFamilySSF559613.98E-15557711No hitNo description
SuperFamilySSF559613.98E-15746785No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MYGDCQVMPN MGGNIVSTET LFSSPPVQNP NFNFMPFHSF PSIAPKEENG LLMFRGKEDV  60
ESGSGSEQVE EKSGNELESS DQLQQPNNKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRM  120
RLSQELGLKP RQVKFWFQNR RTQMKAQQDR ADNAVLRAEN ESLKSENYRL QAELRSVICP  180
NCGGPAMLGG ISFEDIRIEN ARLREELERV CCLTSRYSGR PVQAMAPAPA LIPPSLDLDM  240
NIYSRHFAEP MPNGGGMMPM PMPMFPEASP YHETGLILME EEKSLAMELA ASSMNELVKM  300
CHAAEPLWIR SNENGKEVLN LEEHARMFPW PLNLKQHSSE FRTEATRDTA VVIMNSITLV  360
DAFLDANKWM ELFPSIVARA KTVQVIASGV SSASGSLHLM YAELQVLSPL VPTREAFFLR  420
YCQQNVEEGT WAVVDFPMDS FHDNNIQPSF PLYRRRPSGC IIQDMPNGYS RVTWVEHAEI  480
EEKPVHQIFS HYVYSAMAFG ASRWLSVLQR QCERVASLMA RNIPDLGVIP SPEARKNLMR  540
LSQRMIRTFS VNISTASGQS WTALSDSCAD TVRITTRKIT EPGQPNGLIL CAVSTTWLPY  600
PHYQVFDLLR DERRRSQQLD VLSNGNALHE VAHIANGSHP GNCISLLRIN VASNSSQHVE  660
LMLQESCTDQ SGSLVVYTTV DVDSIQLAMS GEDPSCIPLL PLGFVIVPVE PIKESNTTSG  720
DGNGNGNSMA LSPEEANNIG VQNNSAGCLL TVGLQVLGST IPSAKLNLSS VNAINSHLCS  780
TVQQITAALS RTLRNIYMM
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432745.20.0homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLV4T3K10.0V4T3K1_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006432745.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]