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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10003996m | ||||||||
Common Name | CICLE_v10003996mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 799aa MW: 89049.4 Da PI: 6.0088 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.8e-20 | 90 | 145 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Ciclev10003996m 90 KKRYHRHTARQIQEMEALFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 145 688899***********************************************998 PP | |||||||
2 | START | 156.7 | 1.8e-49 | 289 | 514 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....k 78 la + ++elvk+ a+ep+W +s eng+evl +e ++ +++ea r+++vv+m++ +lv +ld + +W e ++ + Ciclev10003996m 289 LAASSMNELVKMCHAAEPLWIRSN--ENGKEVLNLEEHARMfpwplnlkqhsseFRTEATRDTAVVIMNSITLVDAFLDAN-KWMELFPsivaR 379 78899*******************..**********99888****************************************.******99999* PP EEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 79 aetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 a+t++vi sg g l+lm+aelq+lsplvp R+ f+Ry++q ++g+w++vd ds +++ ++s+ +++pSg++i++++ng+s+vt Ciclev10003996m 380 AKTVQVIASGvssasGSLHLMYAELQVLSPLVPtREAFFLRYCQQnVEEGTWAVVDFPMDSFHDNNIQPSFPLYRRRPSGCIIQDMPNGYSRVT 473 *********************************************99******************9999888888******************* PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 wveh++ +++ +h+++ + v s +a+ga++w++ lqrqce+ Ciclev10003996m 474 WVEHAEIEEKPVHQIFSHYVYSAMAFGASRWLSVLQRQCER 514 ***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.63E-19 | 80 | 148 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 85 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.378 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-19 | 88 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.44E-18 | 90 | 148 | No hit | No description |
Pfam | PF00046 | 5.4E-18 | 90 | 145 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.456 | 279 | 517 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.16E-30 | 280 | 516 | No hit | No description |
CDD | cd08875 | 2.62E-113 | 283 | 513 | No hit | No description |
SMART | SM00234 | 4.3E-31 | 288 | 514 | IPR002913 | START domain |
Pfam | PF01852 | 4.9E-41 | 289 | 514 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.98E-15 | 557 | 711 | No hit | No description |
SuperFamily | SSF55961 | 3.98E-15 | 746 | 785 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 799 aa Download sequence Send to blast |
MYGDCQVMPN MGGNIVSTET LFSSPPVQNP NFNFMPFHSF PSIAPKEENG LLMFRGKEDV 60 ESGSGSEQVE EKSGNELESS DQLQQPNNKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRM 120 RLSQELGLKP RQVKFWFQNR RTQMKAQQDR ADNAVLRAEN ESLKSENYRL QAELRSVICP 180 NCGGPAMLGG ISFEDIRIEN ARLREELERV CCLTSRYSGR PVQAMAPAPA LIPPSLDLDM 240 NIYSRHFAEP MPNGGGMMPM PMPMFPEASP YHETGLILME EEKSLAMELA ASSMNELVKM 300 CHAAEPLWIR SNENGKEVLN LEEHARMFPW PLNLKQHSSE FRTEATRDTA VVIMNSITLV 360 DAFLDANKWM ELFPSIVARA KTVQVIASGV SSASGSLHLM YAELQVLSPL VPTREAFFLR 420 YCQQNVEEGT WAVVDFPMDS FHDNNIQPSF PLYRRRPSGC IIQDMPNGYS RVTWVEHAEI 480 EEKPVHQIFS HYVYSAMAFG ASRWLSVLQR QCERVASLMA RNIPDLGVIP SPEARKNLMR 540 LSQRMIRTFS VNISTASGQS WTALSDSCAD TVRITTRKIT EPGQPNGLIL CAVSTTWLPY 600 PHYQVFDLLR DERRRSQQLD VLSNGNALHE VAHIANGSHP GNCISLLRIN VASNSSQHVE 660 LMLQESCTDQ SGSLVVYTTV DVDSIQLAMS GEDPSCIPLL PLGFVIVPVE PIKESNTTSG 720 DGNGNGNSMA LSPEEANNIG VQNNSAGCLL TVGLQVLGST IPSAKLNLSS VNAINSHLCS 780 TVQQITAALS RTLRNIYMM |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432745.2 | 0.0 | homeobox-leucine zipper protein HDG5 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | V4T3K1 | 0.0 | V4T3K1_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006432745.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4356 | 25 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10003996m |
Entrez Gene | 18042841 |
Publications ? help Back to Top | |||
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