PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 315aa MW: 35359.5 Da PI: 5.2075

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10003964m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.1	4.8e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s Ciclev10003964m 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	27.1	1.8e-10	92	161	10	79
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + ++ e+lqqe+ +L++++++ + ++R + + L s+k++++ e++L + l+++ ++K+ ll ++++ Ciclev10003964m 92 DIQNKEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRKEFLLSNHLSS 161 568899**********************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.955	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.6E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.8E-30	2	80	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.81E-37	2	75	No hit	No description
PRINTS	PR00404	3.1E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.1E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.5E-6	94	169	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR 60 KRIEDVFSRY VNLPDQEREH AIIFPDQGRH PDIQNKEELQ QEVGRLQQQL QMAEDQIRIY 120 EPDPLRITSI KDIESCEKNL VDTLTQVSQR KEFLLSNHLS SYDPSSMQQQ AMPSSFENEV 180 VGWLPGGGHN QAQIFESSAS LNELRDLSTT MYDPLLQGTS SNAGPHSIGE CHVTNPSGEN 240 FATWPQAFVS AGLHSAPLSP SLYPQIQQHG MMGTDTNEIL PRDQVEIPIN APHVQADNEG 300 ANYDQNKIPQ VNGQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	5e-17	1	84	1	85	MEF2 CHIMERA
6bz1_B	5e-17	1	84	1	85	MEF2 CHIMERA
6bz1_C	5e-17	1	84	1	85	MEF2 CHIMERA
6bz1_D	5e-17	1	84	1	85	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024040406.1	0.0	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	1e-118	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	V4V5L5	0.0	V4V5L5_9ROSI; Uncharacterized protein
STRING	XP_006434044.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2179	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-107	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Ciclev10003964m
Entrez Gene	18040866

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]