PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003964m
Common NameCICLE_v10003964mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 315aa    MW: 35359.5 Da    PI: 5.2075
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003964mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.8e-28958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  Ciclev10003964m  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                     79********************************************9997 PP
2K-box27.11.8e-10921611079
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                      + ++ e+lqqe+ +L++++++ + ++R +  + L   s+k++++ e++L + l+++ ++K+ ll ++++ 
  Ciclev10003964m  92 DIQNKEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRKEFLLSNHLSS 161
                      568899**********************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-30280IPR002100Transcription factor, MADS-box
CDDcd002657.81E-37275No hitNo description
PRINTSPR004043.1E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-694169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
KRIEDVFSRY VNLPDQEREH AIIFPDQGRH PDIQNKEELQ QEVGRLQQQL QMAEDQIRIY  120
EPDPLRITSI KDIESCEKNL VDTLTQVSQR KEFLLSNHLS SYDPSSMQQQ AMPSSFENEV  180
VGWLPGGGHN QAQIFESSAS LNELRDLSTT MYDPLLQGTS SNAGPHSIGE CHVTNPSGEN  240
FATWPQAFVS AGLHSAPLSP SLYPQIQQHG MMGTDTNEIL PRDQVEIPIN APHVQADNEG  300
ANYDQNKIPQ VNGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-17184185MEF2 CHIMERA
6bz1_B5e-17184185MEF2 CHIMERA
6bz1_C5e-17184185MEF2 CHIMERA
6bz1_D5e-17184185MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040406.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-118AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLV4V5L50.0V4V5L5_9ROSI; Uncharacterized protein
STRINGXP_006434044.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-107AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]