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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10003903m | ||||||||
Common Name | CICLE_v10003903mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 23986.8 Da PI: 10.3597 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.7e-20 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a+++a+++++g Ciclev10003903m 123 HFRGVRQRP-WGKWAAEIRDPK----KaARIWLGTFDTAEAAALAYDEAALRFKG 172 58*******.**********94....45************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.05E-21 | 123 | 181 | No hit | No description |
SMART | SM00380 | 3.0E-38 | 123 | 186 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 123 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-14 | 123 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-22 | 123 | 181 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.816 | 123 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MPSSLQCSTT AEGRSAPSML VGTSAPLNQS VSSPMNLPQC SGMDPNSSTS SLVSQYSGAQ 60 PQLENQYKRL RRESPSTIAY TPQTPASDNL SRSSLATQYG PGVAHIGGQT QFGLLAGNVS 120 RMHFRGVRQR PWGKWAAEIR DPKKAARIWL GTFDTAEAAA LAYDEAALRF KGRKAKLNFP 180 ERQPNYGIPS GLYGKYRYLP VTFPTTSSSS SLSSSSATSS QQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-24 | 123 | 182 | 2 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006471819.1 | 1e-122 | sodium channel and clathrin linker 1-like isoform X2 | ||||
Refseq | XP_024039696.1 | 1e-122 | sodium channel and clathrin linker 1 | ||||
TrEMBL | V4V3D9 | 1e-161 | V4V3D9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006433144.1 | 1e-162 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12738 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 9e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10003903m |
Entrez Gene | 18042629 |